cluster # 1498

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Anopheles gambiae
cluster # 1498 cluster # 1498 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1498#0 length = 681 sequences # 1

consensus_1498#1 length = 587 sequences # 1

consensusID : consensus_1498#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCATAAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGATCTGCTCGTTTGAACGTTGTACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCGTGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTATTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGAACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATTTCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAACGTACATTGGCTTCATGTCGGAGCTGCTGGCCGG]

[+] EMBL CNS08LNJ             [GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCATAAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGATCTGCTCGTTTGAACGTTGTACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCGTGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTATTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGAACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATTTCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAACGTACATTGGCTTCATGTCGGAGCTGCTGGCCGG]




>consensus_1498#0
GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCATAAATGGATGCA
TACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGATCTGCTCGTTTG
AACGTTGTACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCGTGTGGATCGCTG
ATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTATTGATAATGTTT
GCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGAACGTTACACACA
CGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATTTCTTTCCTGTTA
TTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGT
CAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAA
AACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACATACGCGAACGGCG
CCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGC
GTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAACGTACATTGGCTT
CATGTCGGAGCTGCTGGCCGG

consensusID : consensus_1498#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 587
fasta sequence

                              [CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGGTGGCTGGAACGTTTAGTGGTGTTGAGTGTGCTAAGAAGTTTTATGTATGGAAATCCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTGTTAAAAAAAAACGGCCAAAACGGATTTTATTGAACAAAAAGGTCTACACAACATTAGAACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGCACCCTTTACGCCAATCTGGGGCCAGGAAGCCCCGTCACCGATGGTACACTATCCGGAGCTGATGGCCGGCTTTCCGTGTGCAGATTTAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGA]

[+] EMBL BM648871             [CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGGTGGCTGGAACGTTTAGTGGTGTTGAGTGTGCTAAGAAGTTTTATGTATGGAAATCCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTGTTAAAAAAAAACGGCCAAAACGGATTTTATTGAACAAAAAGGTCTACACAACATTAGAACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGCACCCTTTACGCCAATCTGGGGCCAGGAAGCCCCGTCACCGATGGTACACTATCCGGAGCTGATGGCCGGCTTTCCGTGTGCAGATTTAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGA]




>consensus_1498#1
CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGG
TGGCTGGAACGTTTAGTGGTGTTGAGTGTGCTAAGAAGTTTTATGTATGGAAATCCGTTC
GAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTGTTAAAA
AAAAACGGCCAAAACGGATTTTATTGAACAAAAAGGTCTACACAACATTAGAACAATATC
ACACAGAATGGAACCACCGTTTCCGCCGGATGTGGCACCCTTTACGCCAATCTGGGGCCA
GGAAGCCCCGTCACCGATGGTACACTATCCGGAGCTGATGGCCGGCTTTCCGTGTGCAGA
TTTAGCTATCTGGCCCCGGCAGCAGGTCGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACG
TGGCGCACAACCAGCACCGTCCAGTGGGTCGACAAAGAAAACGCGCCGCCGGGTAGCGTC
GATGGCACAGCGGCGCGCAGCCAACATACGCGAACGGCGCCGCATGTTCAACCTGAACGA
AGCGTTCGACAAGCTGCGCCGCAAAGTGCCCACCTTCGCGTACGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1498#0      -----------GTTACTATACAATATCGCGTTTAATGGTTCTTTTTAAACAGTTTTTCAT 49
consensus_1498#1      CCGGACGTTCGTTCGGTGTGGGACACACAGTTTGAGGCCTCTGTCCGGAGACCAGAGCGG 60
                                  *   * *   * *    **** * *  *** *    * *      *  

consensus_1498#0      AAATGGATGCATACAGTAGTTTTGACATTCATTGTACATTGACGATGACTCTGCGTTGAT 109
consensus_1498#1      TGGCTGGAACGTTTAGTGGTGTTGAG------TGTGCTAAGAAGTTTTATGTATGGAAAT 114
                           *   * *  *** ** ****       *** *   ** * *   * *  *   **

consensus_1498#0      CTGCTCGTTTGAACGTTGT-ACCATGCGTGGGACGGTTGGAGATGATGTAAAAAAGCGCG 168
consensus_1498#1      CCGTTCGAACGAAAGTTTCCACAAAGTGTAAATTAATGTGAAAAATAGCGAAACAAATTG 174
                      * * ***   *** ***   ** * * **       *  ** *    *  *** *    *

consensus_1498#0      TGTGGATCGCTGATTTGATGCTGATCTTTGCTTTGTGTTTGAGAACCACAGCCATGGCTA 228
consensus_1498#1      TTAAAAAAAAACGGCCAAAACGGATTTTA---TTGAACAAAAAGGTC-TACACAACATTA 230
                      *    *           *  * *** **    ***      *    *  *  **    **

consensus_1498#0      TTGATAATGTTTGCCACTGTCGCACGTGTGTTGTAAATTGATGGGAGGAAGAAACATTGA 288
consensus_1498#1      G-AACAATATCACACAGAATGGAACCACCGTTTCCGCCGGATGTGGC------ACCCTTT 283
                         * *** *    **   * * **    ***       **** *        **  *  

consensus_1498#0      ACGTTACACACACGCACACACAGCACAGTGCAGCGGCATTTGACTTTCGGATTTTAAATT 348
consensus_1498#1      ACGCCA-ATCTGGGGCCAGGAAGCCCCGT-CACCGATGGTACACT-----ATCCGGAGCT 336
                      ***  * *     *  **   *** * ** ** **    *  ***     **    *  *

consensus_1498#0      TCTTTCCTGTTATTTTGTTTCTTTTTCGTTTCTTACAGCTATCTGGCCCCGGCAGCAGGT 408
consensus_1498#1      GATGGCCGGCT------TTCCGTGTGCAGATTT---AGCTATCTGGCCCCGGCAGCAGGT 387
                        *  ** * *      ** * * * *   * *   ************************

consensus_1498#0      CGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGG 468
consensus_1498#1      CGGCAGTTTCGTCAGCCAGCGGCTTTCGCCACGTGGCGCACAACCAGCACCGTCCAGTGG 447
                      ************************************************************

consensus_1498#0      GTCGACAAAGAAAACGCGCCGCCGAGTAGCCTCGATGGCACAGCGGCGCGCAGCAAACAT 528
consensus_1498#1      GTCGACAAAGAAAACGCGCCGCCGGGTAGCGTCGATGGCACAGCGGCGCGCAGCCAACAT 507
                      ************************ ***** *********************** *****

consensus_1498#0      ACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGT 588
consensus_1498#1      ACGCGAACGGCGCCGCATGTTCAACCTGAACGAAGCGTTCGACAAGCTGCGCCGCAAAGT 567
                      ************************************************************

consensus_1498#0      GCCCACCTTCGCGTACGAGAAACGGTTGTCGCGCATCGAAACACTGCGCCTGGCGATAAC 648
consensus_1498#1      GCCCACCTTCGCGTACGAGA---------------------------------------- 587
                      ********************                                        

consensus_1498#0      GTACATTGGCTTCATGTCGGAGCTGCTGGCCGG 681
consensus_1498#1      ---------------------------------