cluster # 1501

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Anopheles gambiae
cluster # 1501 cluster # 1501 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1501#0 length = 686 sequences # 1

consensus_1501#1 length = 494 sequences # 1

consensusID : consensus_1501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAACGAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAATATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTCGCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTGCCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTGTTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATGGTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGGTGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG]

[+] EMBL BM609395             [CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAACGAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAATATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTCGCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTGCCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTGTTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATGGTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGGTGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG]




>consensus_1501#0
CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGT
GCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAAC
AGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGC
ACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGA
TGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAACGAACGCTTTTTTT
TTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAATATCGAGAGAAGAA
AGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTCGCACGAAGGGATG
CCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTGCCCCTGCCGGCGG
CGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTGTTCACCGACGCAC
CGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATGGTCGCTGTCGGAG
AGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGGTGGTGGCGGTTTC
AATCCAGCTAGCGATCATCAACCGGG

consensusID : consensus_1501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGAGATGGCGCTGAACGTGTCGAACCGGTACATCAAGACGCTGCTGTCGCTCGCGATCACCGACGGCACGATCCAGCGCATCAGCACGTCGTTCGCCCGGTTCTCGTCCCCGGTCTGCCTGAATGTGTCGAACAACAACATCAGCGAGATCGAGCCGCGCGCCTTCCGCGAGCTGCGCAACCTCACGATGCTCGACC]

[+] EMBL BM628856             [CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTGGCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAACGCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGATTACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACATCCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGAGATGGCGCTGAACGTGTCGAACCGGTACATCAAGACGCTGCTGTCGCTCGCGATCACCGACGGCACGATCCAGCGCATCAGCACGTCGTTCGCCCGGTTCTCGTCCCCGGTCTGCCTGAATGTGTCGAACAACAACATCAGCGAGATCGAGCCGCGCGCCTTCCGCGAGCTGCGCAACCTCACGATGCTCGACC]




>consensus_1501#1
CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTG
GCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAAC
GCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGAT
TACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACAT
CCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGA
GATGGCGCTGAACGTGTCGAACCGGTACATCAAGACGCTGCTGTCGCTCGCGATCACCGA
CGGCACGATCCAGCGCATCAGCACGTCGTTCGCCCGGTTCTCGTCCCCGGTCTGCCTGAA
TGTGTCGAACAACAACATCAGCGAGATCGAGCCGCGCGCCTTCCGCGAGCTGCGCAACCT
CACGATGCTCGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1501#0      -------------CCGGCACCGTCGTTTAATTGCTAAAAGCCCCAATCGGTTGGGTTTTG 47
consensus_1501#1      CCGAAATACACAAACTGCACCGTCGTTTCATTGCTAAAAGCCCCAATCGGTTGGGTTTTG 60
                                    * ************ *******************************

consensus_1501#0      GCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAAC 107
consensus_1501#1      GCTGCCAATTTGTGCCACAAAACCGTTGCAAGCCACAGTGGTGCAGTACAACAATCAAAC 120
                      ************************************************************

consensus_1501#0      GCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGAT 167
consensus_1501#1      GCAGCAATCAAACAGTGTGCTTCGATCAAACCACCACATCCCGCAGCAGAGCATCACGAT 180
                      ************************************************************

consensus_1501#0      TACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACAT 227
consensus_1501#1      TACTGTGAAATGCACGACACCGTTGGTCGCCTGCCCATCTTTCTGCTGCTGCTGTTACAT 240
                      ************************************************************

consensus_1501#0      CCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTACCGGCGCAAAC 287
consensus_1501#1      CCGGAAATGAAGATGCACCACTGAGAGACGTACTCGTCCAGCTAACGTGACCGTGCGCGA 300
                      ************************************************  * * **    

consensus_1501#0      GAACGCTTTTTTTTTTTAATTCTGTTTGGTTTTGCTGTTGTCTAAATTAAGCAGCGAAAT 347
consensus_1501#1      GA------------------------TGGCGCTGAACGTGTCGAACCGGTACATCAAGAC 336
                      **                        ***   **    **** **      ** * * * 

consensus_1501#0      ATCGAGAGAAGAAAGCTTAATCAGCGAATCAGCATTACCCGCCGCGTTGCGATGGGATTC 407
consensus_1501#1      GCTGCTGTCGC---TCGCGATCACCGA--CGGCACGATCCAGCGCATCAGCACGTCGTTC 391
                         *           *   **** ***  * ***  * **  *** *    * *   ***

consensus_1501#0      GCACGAAGGGATGCCGTCGTCGCAATGCTGCTTATAATGGGAGTAACCGTGCCGGAGCTG 467
consensus_1501#1      GCCCG----GTTCTCGTCCCCGGTCTGCC-TGAATGTGTCGAACAACAACATCAGCGAGA 446
                      ** **    * *  ****  **   ***     **     **  ***     * * *   

consensus_1501#0      CCCCTGCCGGCGGCGATGGCGCGCATCGTGGACGACACGGTGGCCGGCAGCAACGTTCTG 527
consensus_1501#1      TCGAGCCGCGCGCCTTCCGCGAGCTGCGCA-ACCTCACGATGCTCGACC----------- 494
                       *    *  *** *    *** **  **   **  **** **  ** *            

consensus_1501#0      TTCACCGACGCACCGCAACTGCTGTCGCAGGCGCTCGATCATACTACGCCGATGCATATG 587
consensus_1501#1      ------------------------------------------------------------
                                                                                  

consensus_1501#0      GTCGCTGTCGGAGAGCCACCGCTACCGGTAGATGCTGTGGGAGGAGAAGGAGCAGATGGG 647
consensus_1501#1      ------------------------------------------------------------
                                                                                  

consensus_1501#0      TGGTGGCGGTTTCAATCCAGCTAGCGATCATCAACCGGG 686
consensus_1501#1      ---------------------------------------