cluster # 1502

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Anopheles gambiae
cluster # 1502 cluster # 1502 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1502#0 length = 607 sequences # 1

consensus_1502#1 length = 298 sequences # 1

consensusID : consensus_1502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC]

[+] EMBL BM592572             [CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTCACGGTGC]




>consensus_1502#0
CCGCTGCATCGTCGGCCCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACA
AACTCACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCG
CCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGGTGGAAC
GGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAA
GGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTACAACAT
CCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCTCCCCAC
CGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCATTGCGGA
CGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCAGCGTGT
GGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCATCGACGC
GGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACGCTGGTC
ACGGTGC

consensusID : consensus_1502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT]

[+] EMBL AL933754             [AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTACGACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCTTCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGTGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCGCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT]




>consensus_1502#1
AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC
GACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT
TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACTCCGGGCGTTCGGT
GGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGCG
CAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1502#0      ---CCGCTGCATCGTCGGC-CCGAGCCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 56
consensus_1502#1      AGATCGCCGAGGATCTGATGTTGGAGCGTGCTTGCGGATTGCTTTGCCGAAAGCCCGTAC 60
                          *** *       *     *   **********************************

consensus_1502#0      GACAAACTCACACACACAC--CACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 114
consensus_1502#1      GACAAACACACACACACACACCACCATGCACTGTGCCTTGAGACGACCCGCCCTCTTTCT 120
                      ******* ***********  ***************************************

consensus_1502#0      TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAACCTCCGCGCGTTCGG 174
consensus_1502#1      TCAGCGCCGGCTGCTGGCGGTAGTGCAGCTAGCGCCCCACAACAAC-TCCGGGCGTTCGG 179
                      ********************************************** **** ********

consensus_1502#0      TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 234
consensus_1502#1      TGGAACGGGACAGCACGGGCGCAGTGACGGTTCCGGCGAGCACAGTGACTCCTGGAGCGC 239
                      ************************************************************

consensus_1502#0      GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCTA 294
consensus_1502#1      GCAGAAGGTCGGCCTCACCGCAACGCTCGCGCTGGCCGGCATGTTCGGGCTGCTCGCCT- 298
                      *********************************************************** 

consensus_1502#0      CAACATCCGGCCCGACCAGAGCAAACGGAAAGCTACCGGCTGGCCAGCGTTCGGTTTCCT 354
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CCCCACCGTCAGTGCGAAAACGAGCGCGACCGCGGGCAACCGGCAGCAGTACAACTTCAT 414
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      TGCGGACGCGGTGGAAATATCCGCGCCCGCCGTCGTGTTCATCGAGATCCGGGACCGGCA 474
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      GCGTGTGGACTTTTTCACCCGCGAACCGGTGACGGTGTCGAACGGGTCCGGCTTCATCAT 534
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CGACGCGGGACGGGCTGATCCTCACGAACGCGCAACGTGGTGGTGAGCAAACCGCACACG 594
consensus_1502#1      ------------------------------------------------------------
                                                                                  

consensus_1502#0      CTGGTCACGGTGC 607
consensus_1502#1      -------------