cluster # 1513

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Anopheles gambiae
cluster # 1513 cluster # 1513 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1513#0 length = 790 sequences # 1

consensus_1513#1 length = 654 sequences # 1

consensusID : consensus_1513#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence

                              [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA]

[+] EMBL AL692547             [CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA]




>consensus_1513#0
CCCGAGGTTATAACTACTTTATACAAACACATGACAATCGGCCATAGCGGTTCTCCCCAC
TATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAA
CTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGAT
AGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTG
TGCGGTGATTCTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAG
GAGGGTTAAAATATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAA
TAGAACTTNGAACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTT
TTCAAAGCGAACATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTAC
ATGTTCATTTGANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCG
TTTTCGTTTCAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGA
TGATATTTAGCTGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCT
GCAGAACCTTCTACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGG
TCGTNGTNCTTGCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGC
CACACACACA

consensusID : consensus_1513#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG]

[-] EMBL BM592193             [GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACTACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCCACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTACTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAAAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTTTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAATATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTAATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGCCGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTTTTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG]




>consensus_1513#1
GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCAAACT
ACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCCC
ACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTAC
TTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAAA
AAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCTT
TTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAAT
ATTATTTAAAATTGTTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAATTA
ATGGATAGAAAGTTTGCTGAATTGATTACTCTGTACTAACTTTTCAAAGCGAAATGTTGC
CGTACTCTACATTTTTAGTGTTAAATTTCGATACTTTACATGTTCATTTGAATTTCCGTT
TTGGAAAACGAACCAAGCTTTTAAGTATACGTTGTTTTCGTTTTAGTTGTGCTAGGGACG
TAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGTGCTTATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1513#0      ----------------------------------------------CCCGAGGTTATAAC 14
consensus_1513#1      GCAGAAAAGCCCCTTACATACTCCGGCTCGATATTACTGATTCAGTTTCACAGTCA-AAC 59
                                                                      *   ** * ***

consensus_1513#0      TACTTTATACAAA-CACATGACAA-TCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 72
consensus_1513#1      TACTTTATACAAAACACATGACAAACCGGCCATAGCGGTTCTCCCCACTATCGTTGTTCC 119
                      ************* **********  **********************************

consensus_1513#0      CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 132
consensus_1513#1      CACTTATCTCTCCACGAATTGTTCGATTGAAATAGCGGTACTAATGAACTATTTACCTTA 179
                      ************************************************************

consensus_1513#0      CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 192
consensus_1513#1      CTTTTTTTGTGTTTAGCACCACCAGTGTTAAGAAACATTCCTTGTGATAGGGGTTCGAAA 239
                      ************************************************************

consensus_1513#0      AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 252
consensus_1513#1      AAAAACTATATTCACGAACGCGTTACCAAAATTACCTTTACAAGCGTGTGCGGTGATTCT 299
                      ************************************************************

consensus_1513#0      TTT-GTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 311
consensus_1513#1      TTTTGTTTAAGGTACTATTACTTCGAAAACGAAACCCGACCCAAAAGAGGAGGGTTAAAA 359
                      *** ********************************************************

consensus_1513#0      TATTATTTAAACATTGTNTTTGGCAACAGTAACGAATCGCGTCGAAGAATAGAACTTNGA 371
consensus_1513#1      TATTATTTAAA-ATTGTTTT-GGCAACAGTAACGAATCGCGTCGAAGAATAGAATTTGAA 417
                      *********** ***** ** ********************************* **  *

consensus_1513#0      ACTTCCTGGCATAGAAAGTTTGCTGAACTNGATTACTCTGTACTAACTTTTCAAAGCGAA 431
consensus_1513#1      --TTAATGG-ATAGAAAGTTTGCTGAA-TTGATTACTCTGTACTAACTTTTCAAAGCGAA 473
                        **  *** ***************** * ******************************

consensus_1513#0      CATGTCCGCCGTACTCTACATTTNTAGCTGTTAAATTTCGATACTTTACATGTTCATTTG 491
consensus_1513#1      -ATGTT-GCCGTACTCTACATTTTTAG-TGTTAAATTTCGATACTTTACATGTTCATTTG 530
                       ****  **************** *** ********************************

consensus_1513#0      ANCTTTCCGCTNCTCGGCAACACGAACCAAGCTTTTAAGTATACGTTCGTTTTCGTTTCA 551
consensus_1513#1      AA-TTTCCGTTTT---GGAAAACGAACCAAGCTTTTAAGTATACGTT-GTTTTCGTTTTA 585
                      *  ****** *     * ** ************************** ********** *

consensus_1513#0      GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAGC 611
consensus_1513#1      GTTGTGCTAGGGACGTAGCAACTACGAGGAAAATTACCTTCTCACAGGATGATATTTAG- 644
                      *********************************************************** 

consensus_1513#0      TGCTTATGAGTGATAGCTTGTCTTTTGAGCCTCGTGCTTGCAAGATGCTGCAGAACCTTC 671
consensus_1513#1      TGCTTATCGG-------------------------------------------------- 654
                      *******  *                                                  

consensus_1513#0      TACTGGAATAGATATTCATCTCATGCATCCTCATNTAACTAGTTCTCGGTCGTNGTNCTT 731
consensus_1513#1      ------------------------------------------------------------
                                                                                  

consensus_1513#0      GCNCAGAGAGAGAGACNCCTATCATGNNTTAACCATGTGTTTACCGAGCCACACACACA 790
consensus_1513#1      -----------------------------------------------------------