cluster # 1519

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Anopheles gambiae
cluster # 1519 cluster # 1519 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1519#0 length = 498 sequences # 1

consensus_1519#1 length = 484 sequences # 1

consensusID : consensus_1519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [GAATCCCGAGGTTAANTAAACATACTCTCTTAAGCATCAGTGCAGTCGCCATGGCCAGTTTATCGCATCGACAGTGTTCGGTGAAGTAGTTCAAGTGCGTCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGACGTCTAGCCGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGACGTGCAACGGATGGATCCTTCAATATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGTTTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTATCAGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATCGATCAAGTCAAATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGTGGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT]

[+] EMBL AL695114             [GAATCCCGAGGTTAANTAAACATACTCTCTTAAGCATCAGTGCAGTCGCCATGGCCAGTTTATCGCATCGACAGTGTTCGGTGAAGTAGTTCAAGTGCGTCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGACGTCTAGCCGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGACGTGCAACGGATGGATCCTTCAATATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGTTTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTATCAGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATCGATCAAGTCAAATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGTGGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT]




>consensus_1519#0
GAATCCCGAGGTTAANTAAACATACTCTCTTAAGCATCAGTGCAGTCGCCATGGCCAGTT
TATCGCATCGACAGTGTTCGGTGAAGTAGTTCAAGTGCGTCAAAATGAACGCCCTGCTCG
CTCTGGTGGTTCTTGATGGCGGCGACGTCTAGCCGCTCCGGTCGACAGTGATGCCCAGGC
ACAGATCGTCAGCCAGACGTCGACGTGCAACGGATGGATCCTTCAATATGCGTAAATGTC
NNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGTTTGAGGTTGCTCATCCT
ATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTATCAGATTTTGAATCAGCAAA
TGGNACTCAAGGTTGAAGGATCAGGGGATCGATCAAGTCAAATCAAGGTGCCCGAAGCTG
GATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGTGGCAGGTTTCCGCGGTACA
GACGGGCTTCCTTCCAGT

consensusID : consensus_1519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGTGGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTGATGGCGGCGACCGTCTACGCTGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTCAACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCAATCAAGGTGCCGAAGCTGGATGAAACTGGCCGCCAGATCGGGGAGGAAGATGTGCAGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTACACGCTAAGATACATCGCGGACGAGAATGGATTCCAACCGCAGGCCGACCACCTCCCGGTCGCTCCCAGCGCCTAGGCG]

[+] EMBL AL692565             [CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGTGGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTGATGGCGGCGACCGTCTACGCTGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTCAACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCAATCAAGGTGCCGAAGCTGGATGAAACTGGCCGCCAGATCGGGGAGGAAGATGTGCAGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTACACGCTAAGATACATCGCGGACGAGAATGGATTCCAACCGCAGGCCGACCACCTCCCGGTCGCTCCCAGCGCCTAGGCG]




>consensus_1519#1
CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGTGGCC
AGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGAACGC
CCTGCTCGCTCTGGTGGTTCTGATGGCGGCGACCGTCTACGCTGCTCCGGTCGACAGTGA
TGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTCAACTA
TGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCAATCAA
GGTGCCGAAGCTGGATGAAACTGGCCGCCAGATCGGGGAGGAAGATGTGCAGGTTTCGGT
ACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTACACGCTAAGATACAT
CGCGGACGAGAATGGATTCCAACCGCAGGCCGACCACCTCCCGGTCGCTCCCAGCGCCTA
GGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1519#0      GAATCCCGAGGTTAANT--AAACAT--ACTCTCTTAAG--CATCAGTGCAGTCGCC--AT 52
consensus_1519#1      ----CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGT 56
                          ***********    ******  *********    ****************   *

consensus_1519#0      GGCCAGTTTA-TCGCAT-CGAC-AGTGTT-CGGTGAAGTAGTTCAAGTGCGTCAAAATGA 108
consensus_1519#1      GGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGA 116
                      ********** ****** **** ****** ******************** *********

consensus_1519#0      ACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGAC-GTCTA-GCCGCTCCGGTCGAC 166
consensus_1519#1      ACGCCCTGCTCGCTCTGGTGGTTCT-GATGGCGGCGACCGTCTACGCTGCTCCGGTCGAC 175
                      ************************* ************ ***** ** ************

consensus_1519#0      AGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCG-ACGTGCAAC-GGATGGATCCTTC 224
consensus_1519#1      AGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTC 235
                      ************************************ ********* ****** ******

consensus_1519#0      AA-TATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGT 283
consensus_1519#1      AACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCA 295
                      ** ***** *     **        ***    *    * *  **   * *   *   *  

consensus_1519#0      TTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTAT-C 342
consensus_1519#1      ATCAAGGTGCCGAAGCTGGATGAAA-----CTGGCCGCCAGATCGGGGAGGAAGATGTGC 350
                       * * * ***  *  **  ** ***     **  **  *         *   *  * * *

consensus_1519#0      AGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATC-GATCAAGTCAA 401
consensus_1519#1      AGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTA--CAC 408
                      ** *** *   ***          ** **  *   * * * *  * ** * ** *  ** 

consensus_1519#0      ATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGT 461
consensus_1519#1      GCTAAGATACATCG---CGGACGAGAA--TGGATTCCA-ACCGCAGGCCGACCACCTCCC 462
                         *** * *        *** ** **  ***    ** *   * **  *   *  *   

consensus_1519#0      GGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT 498
consensus_1519#1      GGTCGCTCCCAGCG-CCTAGGCG-------------- 484
                      **  * *  * ***    ** **