cluster # 152

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Anopheles gambiae
cluster # 152 cluster # 152 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_152#0 length = 693 sequences # 1

consensus_152#1 length = 192 sequences # 1

consensusID : consensus_152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTTGGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTGAGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAAAAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGGTGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAGCAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGGAGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGGAAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGAAAGTACAAGGAGGCACTGCTCGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGTGAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGATTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCGCATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG]

[+] EMBL BM614939             [CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTTGGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTGAGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAAAAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGGTGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAGCAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGGAGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGGAAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGAAAGTACAAGGAGGCACTGCTCGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGTGAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGATTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCGCATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG]




>consensus_152#0
CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTT
GGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTG
AGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAA
AAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGG
TGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAG
CAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGG
AGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGG
AAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGAAAGTACAAGGAGGCACTGCTCG
GCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGTGA
AAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGATT
TAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCGCA
TCGATTTCGTAGTGCAGCGGGAGATTGTGCACG

consensusID : consensus_152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [CCGCCCACGCGTCCGGCCGGGCGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCACCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC]

[+] EMBL BM584467             [CCGCCCACGCGTCCGGCCGGGCGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCACCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC]




>consensus_152#1
CCGCCCACGCGTCCGGCCGGGCGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCG
AAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCACCAGCCTCTGTGATTGCTGTT
GCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAA
TATATGTATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_152#0      CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTT 60
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      GGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTG 120
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      AGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAA 180
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      AAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGG 240
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      TGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAG 300
consensus_152#1      ---------------------------------CCGCCCACGC-GTCCGGCCGGGCGCAG 26
                                                       *  * ***         ** *  ***

consensus_152#0      CAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGG 360
consensus_152#1      CGGCCGGCG-GTCCCGCCGGTAATGACAAAAACCGA---AAGAGGAAATAAACGGGACAC 82
                     *   * * * ** * **      * *  **   ***   ** ******* **     *  

consensus_152#0      AGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGG 420
consensus_152#1      GTTCCGTGCACCGGCCAC----CAGCCTCTGTGA-TTGCTGTTGCAGAAGCAGA---AGC 134
                          * ***   *  **    ****  ** * *    * *  ******   **   ** 

consensus_152#0      AAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGA--AAGTACAAGGAGGCACTGCT 478
consensus_152#1      AAAGT-CGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC- 192
                     *** *  *******    **    *  *   **  * *  ** ** *   * * * * * 

consensus_152#0      CGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGT 538
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      GAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGA 598
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      TTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCG 658
consensus_152#1      ------------------------------------------------------------
                                                                                 

consensus_152#0      CATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG 693
consensus_152#1      -----------------------------------