cluster # 1531

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1531 cluster # 1531 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1531#0 length = 455 sequences # 1

consensus_1531#1 length = 389 sequences # 1

consensusID : consensus_1531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGCGAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG]

[+] EMBL CNS08ODC             [TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGCGAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG]




>consensus_1531#0
TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGT
ACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTG
CTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTG
CTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGAC
AAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGC
AAACGGCTACGAAGTCTCAACTAAACGGGGTCCATGTATTTTTTTCCCCGGCATTATTCG
GCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGCG
AAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG

consensusID : consensus_1531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [CCGCGGACGCGTGGGGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA]

[+] EMBL BM608981             [CCGCGGACGCGTGGGGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA]




>consensus_1531#1
CCGCGGACGCGTGGGGGATCGTCACAGATCGGTGCCGCATCCTTGCCGTACGAAGAGAGC
CGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTGCTCATCATGTT
CATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTGCTGATGGAAAG
TGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGACAAGCTGGAACT
GCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGCAAACGGCTACG
AAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTCGGCCACAGTCG
TAGTTTGTGTATATAAATAAACCAATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1531#0      TGGGTAATTTTTTTTTACATTGACCCGGATCGTCACAGATCGGTGCCGCATCCTTGCCGT 60
consensus_1531#1      --------CCGCGGACGCGTGGG---GGATCGTCACAGATCGGTGCCGCATCCTTGCCGT 49
                                       * * *    **********************************

consensus_1531#0      ACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTG 120
consensus_1531#1      ACGAAGAGAGCCGGCAGAATTATCCTTTTTTCCGCCCTAAAGTGATCACTAAAAGAAGTG 109
                      ************************************************************

consensus_1531#0      CTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTG 180
consensus_1531#1      CTCATCATGTTCATTACCAACATACTGCTGAAGAAAGCGAAAAGCAAGAATATCCTCGTG 169
                      ************************************************************

consensus_1531#0      CTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGAC 240
consensus_1531#1      CTGATGGAAAGTGCCGTCAGTGGGCATCAGTTTACCATGATCCGTGAGCGGTTGGCCGAC 229
                      ************************************************************

consensus_1531#0      AAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGC 300
consensus_1531#1      AAGCTGGAACTGCAGCGCTTTGACCCATACATTCAAAAGATGTGCCTGTACCGGGAGCGC 289
                      ************************************************************

consensus_1531#0      AAACGGCTACGAAGTCTCAACTAAACGGGGTCC-ATGTATTTTTTTCCCCGGCATTATTC 359
consensus_1531#1      AAACGGCTACGAAGTCTCAACTAAACGGGGTCCCATGTATTTTTTTCCCCGGCATTATTC 349
                      ********************************* **************************

consensus_1531#0      GGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAACCGTGCGTGTGTTTTTGTGC 419
consensus_1531#1      GGCCACAGTCGTAGTTTGTGTATATAAATAAACCAATAAA-------------------- 389
                      ****************************************                    

consensus_1531#0      GAAGTTACCAAAAAAAAAAAAAAAAAGCACAGTCCG 455
consensus_1531#1      ------------------------------------