cluster # 1537

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Anopheles gambiae
cluster # 1537 cluster # 1537 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1537#0 length = 598 sequences # 1

consensus_1537#1 length = 464 sequences # 1

consensusID : consensus_1537#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [TTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCTCTCACATCCGCTATCTCTTCTCTTTTCTTTGTACGTACTGAGATACTTTTTTGCTACCTTTTTTGACAGGAGTCGATGATAACCACCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAAACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACGCACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAAAAATCATCACCCCCTTAAGGNGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGATAGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAGCGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACGCACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGAGTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTTACTTCGACCGATTTCTCCA]

[+] EMBL BX624808             [TTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCTCTCACATCCGCTATCTCTTCTCTTTTCTTTGTACGTACTGAGATACTTTTTTGCTACCTTTTTTGACAGGAGTCGATGATAACCACCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAAACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACGCACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAAAAATCATCACCCCCTTAAGGNGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGATAGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAGCGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACGCACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGAGTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTTACTTCGACCGATTTCTCCA]




>consensus_1537#0
TTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCTCTCACATC
CGCTATCTCTTCTCTTTTCTTTGTACGTACTGAGATACTTTTTTGCTACCTTTTTTGACA
GGAGTCGATGATAACCACCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAA
ACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACG
CACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAA
AAATCATCACCCCCTTAAGGNGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGAT
AGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAG
CGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACG
CACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGA
GTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTTACTTCGACCGATTTCTCCA

consensusID : consensus_1537#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [CCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAAACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACGCACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAAAAATCATCACCCCCTTAAGGTGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGATAGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAGCGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACGCACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGAGTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTACTTCGATAACCTCGGGGGGATT]

[-] EMBL AL692640             [CCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAAACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACGCACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAAAAATCATCACCCCCTTAAGGTGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGATAGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAGCGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACGCACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGAGTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTACTTCGATAACCTCGGGGGGATT]




>consensus_1537#1
CCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAAACACTTGCAAACATTAA
TTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACGCACCACGCACAATTTGC
ACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAAAAATCATCACCCCCTTA
AGGTGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGATAGAATACTGCTAGCAGC
TGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAGCGCGCGGGCACGACAGA
GGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACGCACGTGATCGCCCACTC
TACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGAGTGTAGGTCGCACGTAC
GTATATGCAGCGTAGACGTCTACTTCGATAACCTCGGGGGGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1537#0      TTCTGATGTTGGAGCGGCCGCAACATGCCTGTTTTTTTTTTTTTTTTTTGCTCTCACATC 60
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      CGCTATCTCTTCTCTTTTCTTTGTACGTACTGAGATACTTTTTTGCTACCTTTTTTGACA 120
consensus_1537#1      ------------------------------------------------------------
                                                                                  

consensus_1537#0      GGAGTCGATGATAACCACCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAA 180
consensus_1537#1      -----------------CCTCAATTCACACACAATCACACAGTCGTGATGCGCAGATCAA 43
                                       *******************************************

consensus_1537#0      ACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACG 240
consensus_1537#1      ACACTTGCAAACATTAATTTCTTTGTGACACACGCGCGCGAGTTCACCGACACTAGCACG 103
                      ************************************************************

consensus_1537#0      CACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAA 300
consensus_1537#1      CACCACGCACAATTTGCACCTTTCACTTCCGTTTCAATCCGGTTTGAAATATGCACGAAA 163
                      ************************************************************

consensus_1537#0      AAATCATCACCCCCTTAAGGNGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGAT 360
consensus_1537#1      AAATCATCACCCCCTTAAGGTGTTGGCGTTTCCTCCCGTCTCTCGAAAGCGTTGCACGAT 223
                      ******************** ***************************************

consensus_1537#0      AGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAG 420
consensus_1537#1      AGAATACTGCTAGCAGCTGCAGATAACGAGCGAGAGATAGACAGAGAGAGAGAGAGAGAG 283
                      ************************************************************

consensus_1537#0      CGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACG 480
consensus_1537#1      CGCGCGGGCACGACAGAGGGGAAAGCAAAAACAACAAAAGCACCGTTTAGTGAAGTCACG 343
                      ************************************************************

consensus_1537#0      CACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGA 540
consensus_1537#1      CACGTGATCGCCCACTCTACCACTGACTACTACGGTGCCACGGATTTGCTGGGTTTGCGA 403
                      ************************************************************

consensus_1537#0      GTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCTTACTTCGACCGATTTCTCCA-- 598
consensus_1537#1      GTGTAGGTCGCACGTACGTATATGCAGCGTAGACGTCT-ACTTCGAT-AACCTCGGGGGG 461
                      ************************************** *******   *  **      

consensus_1537#0      ---
consensus_1537#1      ATT 464