cluster # 154

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Anopheles gambiae
cluster # 154 cluster # 154 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_154#0 length = 772 sequences # 1

consensus_154#1 length = 668 sequences # 1

consensusID : consensus_154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence

                              [CTCTTTTAAGTTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAGAAGCCAGGGCTGACCAACAACTCCAAGGGCAAGCCGGGTGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCATCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTCTT]

[+] EMBL CNS0906Y             [CTCTTTTAAGTTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAGAAGCCAGGGCTGACCAACAACTCCAAGGGCAAGCCGGGTGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCATCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTCTT]




>consensus_154#0
CTCTTTTAAGTTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAAT
CCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACT
CTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCG
CGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAG
TTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCC
GTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCC
GTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGCATCTGCTC
GGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGCTGGACGAG
GAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAGAAGCCAGGGCTG
ACCAACAACTCCAAGGGCAAGCCGGGTGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAA
AACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCATCAGCCTCTGTGATTG
CTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTTCTT

consensusID : consensus_154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATGGAGGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAGCCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCCCGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACACCANGCTCTG]

[+] EMBL BX467290             [CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTGAAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACGGAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGGGTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCGCGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATACCGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCGACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGCATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATGGAGGAGATGGAGGAGGAAGTGCTGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAGCCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCCCGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACACCANGCTCTG]




>consensus_154#1
CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTG
AAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACG
GAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGG
GTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCG
CGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATAC
CGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCG
ACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGC
ATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATGGAGGAGATGGAGGAGGAAGTGCTG
GACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAGCC
AAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCCCG
GTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACACC
ANGCTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_154#0      ------CTCTTTTAAGT--TTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTG 52
consensus_154#1      CAGAATCGCCACGAGNTAGTTCCAAACGTGGTGAGAGTCGCGCATCCATTTGCTTTGCTG 60
                           * *    *  *  *****************************************

consensus_154#0      AAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACG 112
consensus_154#1      AAGAAAATCCGGAAAAAGCCAACTAACCGCACACAAATATGACCGACGAATACTTTTACG 120
                     ************************************************************

consensus_154#0      GAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGG 172
consensus_154#1      GAGCAACTCTCAAGGAGGGCAGCAAAACAGTGACCTGGGACCCGGACAACAAGCCGGAGG 180
                     ************************************************************

consensus_154#0      GTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCG 232
consensus_154#1      GTTACCCGCGGACGAACAAGCTGGTCATCAAACAGTGCCTCCTGGGCCATGAGGCAGCCG 240
                     ************************************************************

consensus_154#0      CGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATAC 292
consensus_154#1      CGGACGAGTTCAACGTGGTGCAGGTGGAGACGATGACCATAAGGGACACGCTCCGCATAC 300
                     ************************************************************

consensus_154#0      CGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCG 352
consensus_154#1      CGATCGCCGTGCTGAAGGTGGGCGAACTGCGACAGTGCCGCATGGATTTGGAGTTCTCCG 360
                     ************************************************************

consensus_154#0      ACGCGCCCGTCACGTTCACGTTGGTCGAGGGCAAGGGACCAGTGCACATCCACGGGCTGC 412
consensus_154#1      ACGCGCCCGTCACGTTCACGTTGGTTGAGGGCAAGGGACCGGTGCACATCCACGGGCTGC 420
                     ************************* ************** *******************

consensus_154#0      ATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGATATGGAAGAGATGGAGGAGGAAGTGC 472
consensus_154#1      ATCTGCTCGGTTCGCTGGTGGAGGAGTTCGAGGAT--GGAGGAGATGGAGGAGGAAGTGC 478
                     ***********************************  *** *******************

consensus_154#0      TGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAAG-AAG 531
consensus_154#1      TGGACGAGGAGGAGGCCGACGAGGACGAGGATGAGGACGGTGCGTCACAGAAGAANGAAG 538
                     *******************************************************  ***

consensus_154#0      CCAGGGCTGACCAA-CAACTCCAAGGGCAAGCCGGGTGCAGC-GGCCGGC-GGTCCCGCC 588
consensus_154#1      CCAAAACTGACCAAGCAACTCCAAGGGCAAGCCGGGCGCAGCAGGCCGGCAGGTCCCGCC 598
                     ***   ******** ********************* ***** ******* *********

consensus_154#0      -GGTAAT-GACAAAAACCGAAAGAGGAAA-TAAACGGGACACGTTCCGTGC-ACCGGCCA 644
consensus_154#1      CGGTAATCGACAAAAACCGAAAGAGGAAAATAAACGGGACACGTTCCGTGCCACCGGACA 658
                      ****** ********************* ********************* ***** **

consensus_154#0      TCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCAT 704
consensus_154#1      CCANGCTCTG-------------------------------------------------- 668
                      **  *****                                                  

consensus_154#0      CATTCCTCACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCG 764
consensus_154#1      ------------------------------------------------------------
                                                                                 

consensus_154#0      AGCTTCTT 772
consensus_154#1      --------