cluster # 1601

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Anopheles gambiae
cluster # 1601 cluster # 1601 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1601#0 length = 520 sequences # 1

consensus_1601#1 length = 519 sequences # 1

consensusID : consensus_1601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence

                              [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA]

[+] EMBL AL933774             [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA]




>consensus_1601#0
AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAA
ACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTA
AGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAA
AAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACA
CACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTT
TCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAA
GGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATG
AGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGA
GCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA

consensusID : consensus_1601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA]

[+] EMBL BM647982             [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA]




>consensus_1601#1
CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGG
GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTA
ACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAA
GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA
CACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACA
AGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAA
AGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAA
GTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATG
CTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1601#0      ------AATCGCCCGAGGNCAAGGAAAA-ACGAGAACAGTGCA-GTGGACTCAAACCAGC 52
consensus_1601#1      CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGG 60
                            **           ***** *** ****** ******* *************** 

consensus_1601#0      GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTA 112
consensus_1601#1      GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTA 120
                      ****************************************** *** *************

consensus_1601#0      ACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACAT 172
consensus_1601#1      ACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAA 180
                      ******* ******************** ************************** *** 

consensus_1601#0      GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 232
consensus_1601#1      GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 240
                      ************************************************************

consensus_1601#0      CACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATT 292
consensus_1601#1      CACACAC----ATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATT 296
                      *******    **************** ********************************

consensus_1601#0      TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 352
consensus_1601#1      TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 356
                      ************************************************************

consensus_1601#0      GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGG--GGGAAGTA 410
consensus_1601#1      GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTA 416
                      ***************************************** ********  ********

consensus_1601#0      GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCT 470
consensus_1601#1      GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCT 476
                      **************************************************** *******

consensus_1601#0      GATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA 520
consensus_1601#1      GATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA------- 519
                      **** **** *********************************