cluster # 1606

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Anopheles gambiae
cluster # 1606 cluster # 1606 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1606#0 length = 704 sequences # 1

consensus_1606#1 length = 625 sequences # 1

consensusID : consensus_1606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGTGCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTGTGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCGTTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAGAACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCAAATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGATCGCCGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATACTGACGCGCATCTACAACATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCTCGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT]

[+] EMBL BM590081             [CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGTGCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTGTGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCGTTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAGAACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCAAATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGATCGCCGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATACTGACGCGCATCTACAACATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCTCGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT]




>consensus_1606#0
CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGT
GCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTG
TGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCG
TTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAG
AACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCA
AATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGATCGCCG
AAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATACTGACGCGCATCTACAACATAA
AGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCTCGAAT
CGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGA
TCGCGAGCATCAAGTCGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGTTCGTCG
ATCTGCTCGACTTTAAGGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAG
ATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT

consensusID : consensus_1606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAGGGGGCGAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGAGCTGACGAAGAACTACCTCGACCTGGTGACGACGTACGTGTCGCTCATGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGTACGAGATGCAGCACACCCAGAGCGATCAGGCATTCCCGCGGCTCGGCCAGATGATCATCGACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTGTCAAGCGCCATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTGCGGAGAAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGTACGCCCGCGATGCTGCTGAAAGCGACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGACCGATGGGTCATTTTCGGGC]

[+] EMBL BM584551             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACATCGACATCAAGGGCCTGACGGCGATCGCGAGCATCAAGTCGGAAGGGGGCGAGTCGCTCTCGCTGTACTACTACACGTTCGTCGATCTGCTCGACTTTAAGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGAGCTGACGAAGAACTACCTCGACCTGGTGACGACGTACGTGTCGCTCATGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGTACGAGATGCAGCACACCCAGAGCGATCAGGCATTCCCGCGGCTCGGCCAGATGATCATCGACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTGTCAAGCGCCATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTGCGGAGAAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGTACGCCCGCGATGCTGCTGAAAGCGACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGACCGATGGGTCATTTTCGGGC]




>consensus_1606#1
CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACATCGACATCAAGGGCCTGACG
GCGATCGCGAGCATCAAGTCGGAAGGGGGCGAGTCGCTCTCGCTGTACTACTACACGTTC
GTCGATCTGCTCGACTTTAAGGACAATGTGTGCGAGATTCTCACCACGATGGATGCGCTC
CAGATCCATCTGGACATTACGCTGAACTTTGAGCTGACGAAGAACTACCTCGACCTGGTG
ACGACGTACGTGTCGCTCATGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTG
GGGCTGTTCAATGCCGCGTACGAGATGCAGCACACCCAGAGCGATCAGGCATTCCCGCGG
CTCGGCCAGATGATCATCGACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTA
CCCCATCAGCGGCTGCTGTCAAGCGCCATCAACTCGCTCACCAAGATTTACTCGATGCGC
AACCTCAGTGCGGAGAAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGTACGCCCGCG
ATGCTGCTGAAAGCGACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACG
CTCGACCGATGGGTCATTTTCGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1606#0      CCGGCGAAGAGTGTTCCGATGCTTAATGTGGTGCTGAATAATACAAAGTGTTTTATTAGT 60
consensus_1606#1      CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTCCCGAACAT--CGACAT----------- 47
                      ***  ** * ***  * ** ** *     * * * *** *   * *  *           

consensus_1606#0      GCAAAAAACCAATAAAAATCGCTGAAAGTGTTGTTAAACGGCAGAGGCCAAACAGTGTTG 120
consensus_1606#1      -CAAGGGCCTGACGGCGATCGC---GAGCATCA--AGTCGGAAGGGGGCGA-----GTCG 96
                       ***    *  *     *****    **  *    *  *** ** ** * *     ** *

consensus_1606#0      TGCGTGGCGCACGAAGCACGAACCGAGCATAACGCCATCCAAATCAGCAAGAGCAATGCG 180
consensus_1606#1      CTCTCGCTGTAC----TACTACACGTTCGTCGATCTGCTCGACTT--TAAGGACAATGTG 150
                        *  *  * **     ** *  **  * *    *    * * *    ***  ***** *

consensus_1606#0      TTAGTCTACGGGGGAACCAACCTGGCGGATGATAGCAGCATTGCCGATTGCACAGAACAG 240
consensus_1606#1      T------GCGAGATTCTCACCACGATGGATGC--GCTCCAGATCCATCTGGACATTACGC 202
                      *       ** *     ** *  *  *****   **  **   **   ** ***  **  

consensus_1606#0      AACGCGCCCGTATCAGTACGCAACTCACACATACACACACACACACGCACGCAACACGCA 300
consensus_1606#1      TGAAC-TTTGAGCTGACGAAGAACT-ACCTCGACCTGGTGACG-ACGTACGTGTCGCTCA 259
                          *    *           **** **    **      **  *** ***   * * **

consensus_1606#0      -AATACGCAAGCTAAACCACGATGGCTCGCCAGCTGAATCCGAGCCAGCAAAAGAT-CGC 358
consensus_1606#1      TGATACTGCTGTCCCGCGTCGAGGACCGGAAGGCCGTGCTGGGGCTGTTCAATGCCGCGT 319
                        ****    *     *  *** * *  *   ** *     * **     ** *   ** 

consensus_1606#0      -CGAAAAGCTGATCATCCTGAACGATCGCGGCGTGGGCATA-CTGACGCGCATCTACAAC 416
consensus_1606#1      ACGAGATGCAGCACACCCAGAGCGATCA-GGCATTCCCGCGGCTCGGCCAGATGATCATC 378
                       *** * ** *  ** ** ** *****  *** *   *    **    *  **   ** *

consensus_1606#0      ATAAAGAAGGCGTGCGGCGACACCAAATCGAAGCCCGGCTTCCTCTCGGAAAAGTCGCT- 475
consensus_1606#1      GACTACGACATGCCGATCAAGAAGCTGTCGGAAGAGTTCGTACCCCATCAGCGGCTGCTG 438
                          *  *   *     * * *     *** *      * * * *    *   *  *** 

consensus_1606#0      CGAATCGTCGATCAAATTCATCGTGAAGCGGTTCCCGAACATCGACATCAAGGGCCTGAC 535
consensus_1606#1      TCAAGCGCC-ATCAACTCGCTCACCAAGATTTACTCGATGCGCAACCTCAGTG--CGGAG 495
                        ** ** * ***** *   **   ***   * * ***    * ** ***  *  * ** 

consensus_1606#0      GGCGATCGCGAGCATCAAGT-CGGAAATCATCAAGTCGCTCTCGCTGTACTACTACACGT 594
consensus_1606#1      AAGTGGCGCGAGCTGCAGGTGCTGAGCTTGATCGGT-ACGCCCGCGATGCTGCTGAAAGC 554
                            *******  ** ** * **  *      **  * * ***  * ** **  * * 

consensus_1606#0      TCGTCGATCTG-CTCGACTTTAAGGGA---CAATGTGTGCGAGATTCTCACCACGATGGA 650
consensus_1606#1      GACCAAAACGGACACGATGTCGTGCGAGTACATTTCGCTCGAAACGCTCGAC-CGATGGG 613
                            * * * * ***  *   * **   ** *  *  *** *  ***  * ****** 

consensus_1606#0      TGCGCTCCAGATCCATCTGGACATTACGCTGAACTTTGGAGCTGACGAAGAACT 704
consensus_1606#1      TCATTTTCGGGC------------------------------------------ 625
                      *    * * *