cluster # 1608

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Anopheles gambiae
cluster # 1608 cluster # 1608 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1608#0 length = 989 sequences # 1

consensus_1608#1 length = 533 sequences # 1

consensusID : consensus_1608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 989
fasta sequence

                              [AGAATCGGCACGAGGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGATCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTATATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGGTGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTACTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGAAGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAATGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGCTGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGTCAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCCGCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTGCNCTCACAACGAGTGGC]

[+] EMBL BX467599             [AGAATCGGCACGAGGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGATCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTATATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGGTGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTACTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGAAGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAATGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGCTGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGTCAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCCGCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTGCNCTCACAACGAGTGGC]




>consensus_1608#0
AGAATCGGCACGAGGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTT
GAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCA
AAAACAAACAATACACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGT
GCGTAATAAATGATCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGC
CAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGAT
TGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTG
TTTGTGCATTTTGTTCCTGTATGACTATAGAGACAGACTTAACGATGGCATCGTAACAGC
TGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTC
TACTGATAGTATATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTT
TTCTAACCCAGGTGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACA
AAGTTAGGTTTACTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTT
GGAACTGGTGGAAGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGT
TTGACGNTNGAATGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGG
CCCNAGAAAAGCTGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGC
ACAATNGGCCGTCAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCA
GAAGTTAGATCCGCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAG
GGCGCGNGTGTGCNCTCACAACGAGTGGC

consensusID : consensus_1608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGAGAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGATCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG]

[+] EMBL BM649504             [CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGAGAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGATCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG]




>consensus_1608#1
CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGA
GAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACA
CTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATA
CACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGA
TCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTA
CGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATT
TTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTG
TTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAA
GGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1608#0      -----------------------------------------------AGAATCGGCACGA 13
consensus_1608#1      CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGA 60
                                                                     * ****     **

consensus_1608#0      GGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACA 73
consensus_1608#1      GAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACA 120
                      * **********************************************************

consensus_1608#0      CTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATA 133
consensus_1608#1      CTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATA 180
                      ************************************************************

consensus_1608#0      CACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGA 193
consensus_1608#1      CACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGA 240
                      ***************** ************************************** ***

consensus_1608#0      TCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTA 253
consensus_1608#1      TCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTA 300
                      ********************************** *************************

consensus_1608#0      CGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATT 313
consensus_1608#1      CGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATT 360
                      ************************************************************

consensus_1608#0      TTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTG 373
consensus_1608#1      TTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTG 420
                      ************************************************************

consensus_1608#0      TTCCTGTATGACTATA-GAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAA 432
consensus_1608#1      TTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAA 480
                      **************** *******************************************

consensus_1608#0      GGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTAT 492
consensus_1608#1      GGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG------- 533
                      *****************************************************       

consensus_1608#0      ATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGG 552
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      TGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTA 612
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGA 672
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      AGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAA 732
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      TGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGC 792
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      TGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGT 852
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCC 912
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      GCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTG 972
consensus_1608#1      ------------------------------------------------------------
                                                                                  

consensus_1608#0      CNCTCACAACGAGTGGC 989
consensus_1608#1      -----------------