cluster # 1610

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Anopheles gambiae
cluster # 1610 cluster # 1610 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1610#0 length = 899 sequences # 1

consensus_1610#1 length = 412 sequences # 1

consensusID : consensus_1610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 899
fasta sequence

                              [AGAATCCCCCGCGGTTAATCTTTATTTTTACGTTTGGCCAACAAAGTNAACACAACCACAAAACACACGAACGAAGTGGACGGGTGCGTGTTTAGTAGTGTAGCATCAATGGAAAACTCTCCACACACACACACTTGTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTATTAGTGGTTAAATCTAGAACAAACTGGAGCAATGCAAACCAGAGACCGGTGCAGCATGCAACTGAACAACAAAACACTCGTACTACGGCAATAGCTCCAACAGCGAGTGGTGCNACTGGGCACCCGAAGCGACNGTTANGAACGCGAAGTAACTAGACTATCACCATTTCTACTGGGNAAACACACGACNGGACACGAACACACAGAGATGAACTATTGATGCACTTCTTTACTACAACTTCTTTTCNACTTTTTCGACCCACTTTTCTAATNACGGCACAAACNNCCCGACTTTGCCCCCTTNGCAATTCANACCAATTGCCAAACGTTCCCTCAACCGCTATCTTTCAAGCAACCAACCTTATTACACTCNCGTCTCACTTCTCTAACCCGGACTANACTACGTATACACACNCCACNCTACACTCTCTCCACAACCACACACNAATTCCTAATCTTACACCTTGGCAAACAAGGTATCGTTTCGNCCTTTGGGGANCGGAAANGCCACGGAACTNTCANCTTANTTACCGGAACATTTTAANGGTCCTTCCCTATCAGNGACANTTGGTTCCCCACCGGGCCAAACCCCCCCGGGCAAGGGAAATTAACACACGCACAAACATGGAAGGCANGNNGGACGCACGGAAGNACGCAGCGNGGAAGACGGCCACACGCAANCACAGACTCCCAAGCCCCGAACAACAAGCCGNTACTCTTC]

[+] EMBL AL692999             [AGAATCCCCCGCGGTTAATCTTTATTTTTACGTTTGGCCAACAAAGTNAACACAACCACAAAACACACGAACGAAGTGGACGGGTGCGTGTTTAGTAGTGTAGCATCAATGGAAAACTCTCCACACACACACACTTGTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTATTAGTGGTTAAATCTAGAACAAACTGGAGCAATGCAAACCAGAGACCGGTGCAGCATGCAACTGAACAACAAAACACTCGTACTACGGCAATAGCTCCAACAGCGAGTGGTGCNACTGGGCACCCGAAGCGACNGTTANGAACGCGAAGTAACTAGACTATCACCATTTCTACTGGGNAAACACACGACNGGACACGAACACACAGAGATGAACTATTGATGCACTTCTTTACTACAACTTCTTTTCNACTTTTTCGACCCACTTTTCTAATNACGGCACAAACNNCCCGACTTTGCCCCCTTNGCAATTCANACCAATTGCCAAACGTTCCCTCAACCGCTATCTTTCAAGCAACCAACCTTATTACACTCNCGTCTCACTTCTCTAACCCGGACTANACTACGTATACACACNCCACNCTACACTCTCTCCACAACCACACACNAATTCCTAATCTTACACCTTGGCAAACAAGGTATCGTTTCGNCCTTTGGGGANCGGAAANGCCACGGAACTNTCANCTTANTTACCGGAACATTTTAANGGTCCTTCCCTATCAGNGACANTTGGTTCCCCACCGGGCCAAACCCCCCCGGGCAAGGGAAATTAACACACGCACAAACATGGAAGGCANGNNGGACGCACGGAAGNACGCAGCGNGGAAGACGGCCACACGCAANCACAGACTCCCAAGCCCCGAACAACAAGCCGNTACTCTTC]




>consensus_1610#0
AGAATCCCCCGCGGTTAATCTTTATTTTTACGTTTGGCCAACAAAGTNAACACAACCACA
AAACACACGAACGAAGTGGACGGGTGCGTGTTTAGTAGTGTAGCATCAATGGAAAACTCT
CCACACACACACACTTGTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTATT
AGTGGTTAAATCTAGAACAAACTGGAGCAATGCAAACCAGAGACCGGTGCAGCATGCAAC
TGAACAACAAAACACTCGTACTACGGCAATAGCTCCAACAGCGAGTGGTGCNACTGGGCA
CCCGAAGCGACNGTTANGAACGCGAAGTAACTAGACTATCACCATTTCTACTGGGNAAAC
ACACGACNGGACACGAACACACAGAGATGAACTATTGATGCACTTCTTTACTACAACTTC
TTTTCNACTTTTTCGACCCACTTTTCTAATNACGGCACAAACNNCCCGACTTTGCCCCCT
TNGCAATTCANACCAATTGCCAAACGTTCCCTCAACCGCTATCTTTCAAGCAACCAACCT
TATTACACTCNCGTCTCACTTCTCTAACCCGGACTANACTACGTATACACACNCCACNCT
ACACTCTCTCCACAACCACACACNAATTCCTAATCTTACACCTTGGCAAACAAGGTATCG
TTTCGNCCTTTGGGGANCGGAAANGCCACGGAACTNTCANCTTANTTACCGGAACATTTT
AANGGTCCTTCCCTATCAGNGACANTTGGTTCCCCACCGGGCCAAACCCCCCCGGGCAAG
GGAAATTAACACACGCACAAACATGGAAGGCANGNNGGACGCACGGAAGNACGCAGCGNG
GAAGACGGCCACACGCAANCACAGACTCCCAAGCCCCGAACAACAAGCCGNTACTCTTC

consensusID : consensus_1610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [TGTAGCATCAATGGAAAACTCTCCACACACACACACTTGNTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTATTAGGGTTAAATCTAGAACAAACTGGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAAGAGAGAAGAAGAAAAAGTGCGAGAGAGAAAATAAAAGCGCAAATATTCTTCCAACGTTTGAAAAGAAGTGAAACTCACGGCGCACGGCTTTTTTTTTCGATTTAGTTGATTTGTTTGGTACATTGGTGTATTGAAACATGAAAGTCTGACAACGGTTATTGCTTAGGTTAGGACAACTTAAGACAGAGAAACACGGAGTATTAGTGGGAAGAGAATAATGCAGCAAAAACGTAATAAAAACAGAGAGA]

[+] EMBL BX621196             [TGTAGCATCAATGGAAAACTCTCCACACACACACACTTGNTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTATTAGGGTTAAATCTAGAACAAACTGGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAAGAGAGAAGAAGAAAAAGTGCGAGAGAGAAAATAAAAGCGCAAATATTCTTCCAACGTTTGAAAAGAAGTGAAACTCACGGCGCACGGCTTTTTTTTTCGATTTAGTTGATTTGTTTGGTACATTGGTGTATTGAAACATGAAAGTCTGACAACGGTTATTGCTTAGGTTAGGACAACTTAAGACAGAGAAACACGGAGTATTAGTGGGAAGAGAATAATGCAGCAAAAACGTAATAAAAACAGAGAGA]




>consensus_1610#1
TGTAGCATCAATGGAAAACTCTCCACACACACACACTTGNTTCTCGCTAGCGGGAAGGGT
GGGACAACTATATCAAAAGTATTAGGGTTAAATCTAGAACAAACTGGAGAGAGAGAGAGA
GAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTAAAGAGAGAAGAAGAAAAA
GTGCGAGAGAGAAAATAAAAGCGCAAATATTCTTCCAACGTTTGAAAAGAAGTGAAACTC
ACGGCGCACGGCTTTTTTTTTCGATTTAGTTGATTTGTTTGGTACATTGGTGTATTGAAA
CATGAAAGTCTGACAACGGTTATTGCTTAGGTTAGGACAACTTAAGACAGAGAAACACGG
AGTATTAGTGGGAAGAGAATAATGCAGCAAAAACGTAATAAAAACAGAGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1610#0      AGAATCCCCCGCGGTTAATCTTTATTTTTACGTTTGGCCAACAAAGTNAACACAACCACA 60
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      AAACACACGAACGAAGTGGACGGGTGCGTGTTTAGTAGTGTAGCATCAATGGAAAACTCT 120
consensus_1610#1      --------------------------------------TGTAGCATCAATGGAAAACTCT 22
                                                            **********************

consensus_1610#0      CCACACACACACACTTGTT-CTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTAT 179
consensus_1610#1      CCACACACACACACTTGNTTCTCGCTAGCGGGAAGGGTGGGACAACTATATCAAAAGTAT 82
                      ***************** * ****************************************

consensus_1610#0      TAGTGGTTAAATCTAGAACAAACTGGAGCAATGCAAACCAGAGACCGGTGCAGCATGCAA 239
consensus_1610#1      TAG-GGTTAAATCTAGAACAAACTGGAGAGAGAGAGAG-AGAGAGAGATAGAGAGAGAGA 140
                      *** ************************  *   * *  *****  * *  **   *  *

consensus_1610#0      CTGAACAACAAAACACTCGTACTACGGCAATAGCTCCAACAGCGAGTGGTGCNACTGGGC 299
consensus_1610#1      GAGAGAGAGAGA--------------GAGAGAGTTAAAGAGAGAAGAAGAAAAAGTG--- 183
                        **   * * *              *  * ** *  *      **  *    * **   

consensus_1610#0      ACCCGAAGCGACNGTTANGAACGCGAAGTAACTAGACTATCACCATTTCTACTGGGNAAA 359
consensus_1610#1      ---CGAGAGAGAAAATAAAAGCGCAAA-----TATTCTTCCAACGTTT-------GAAAA 228
                         ***         **  * *** **     **  **  ** * ***       * ***

consensus_1610#0      CACACGACNGGACACGAACACACAGAGATGAACTATTGATGCACTTCTTTACTACAACTT 419
consensus_1610#1      GAAGTGA---------AACTCACGGCG------------CACGGCTTTTTTTTTCGATTT 267
                       *   **         *** *** * *              *   * ***  * * * **

consensus_1610#0      CTTTTCNACTTTTTCGACCCACTTTTCTAATNACGGCACAAACNNCCCGACTTTGCCCCC 479
consensus_1610#1      AGTT--GATTTGTTTGGTACATTGGTGTATTGA-AACATGAA-AGTCTGACAACGGTTAT 323
                        **   * ** ** *   ** *  * ** * *   **  **    * ***   *     

consensus_1610#0      TTNGCAATTCANACCAATTGCCAAACGTTCCCTCAACCGCTATCTTTCAAGCAACCAACC 539
consensus_1610#1      TGCTTAGGTTAGGACAACT-TAAGACAGAGAAACACGGAGTAT-TAGTGGGAAGAGAATA 381
                      *    *  * *   *** *   * **       **     *** *     * *   **  

consensus_1610#0      TTATTACACTCNCGTCTCACTTCTCTAACCCGGACTANACTACGTATACACACNCCACNC 599
consensus_1610#1      ATGCAGCAAAAACGTAATA-------AAAACAGAGAGA---------------------- 412
                       *    **    ***   *       **  * **                          

consensus_1610#0      TACACTCTCTCCACAACCACACACNAATTCCTAATCTTACACCTTGGCAAACAAGGTATC 659
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GTTTCGNCCTTTGGGGANCGGAAANGCCACGGAACTNTCANCTTANTTACCGGAACATTT 719
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      TAANGGTCCTTCCCTATCAGNGACANTTGGTTCCCCACCGGGCCAAACCCCCCCGGGCAA 779
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GGGAAATTAACACACGCACAAACATGGAAGGCANGNNGGACGCACGGAAGNACGCAGCGN 839
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GGAAGACGGCCACACGCAANCACAGACTCCCAAGCCCCGAACAACAAGCCGNTACTCTTC 899
consensus_1610#1      ------------------------------------------------------------