cluster # 1617

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Anopheles gambiae
cluster # 1617 cluster # 1617 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1617#0 length = 816 sequences # 1

consensus_1617#1 length = 509 sequences # 1

consensusID : consensus_1617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 816
fasta sequence

                              [CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAGCGATCATGTTGAATTGGAGAGTATTTCTGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCGAACGAGAGCAAACAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACACAAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTTACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCATCCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAGATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACACCCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAACACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAACAAGACACNGAGCAACACGAANAAACNCAANNACNCACA]

[+] EMBL AL693041             [CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAGCGATCATGTTGAATTGGAGAGTATTTCTGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCGAACGAGAGCAAACAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACACAAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTTACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCATCCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAGATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACACCCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAACACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAACAAGACACNGAGCAACACGAANAAACNCAANNACNCACA]




>consensus_1617#0
CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAG
CGATCATGTTGAATTGGAGAGTATTTCTGTTTGTTACAGTGACCGTGTTTCTCTTTGTGC
AGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCA
CGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCGA
ACGAGAGCAAACAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGT
GAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGC
GGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACACAA
AAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTTAC
AGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCATCC
CAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAGAT
AAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACACCC
AGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAACA
CAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAACAA
GACACNGAGCAACACGAANAAACNCAANNACNCACA

consensusID : consensus_1617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [GAGGCAAGAATCGGCACGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCATTGAAGAATATTTTACAGCGTGCCATCGGTGATAATTCTTCCGACGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCTGATGGGCTTCTGTCGTGCGAATTGGGATCGGATGCAGCGCTGCAACAAAGGCCCCCAAACGCCCATTGCGTGAGTGCAATTTGCGAATAGTTCAGGGTTATTGTTCCGCTTGATCAACCGCNTAACGCCGAACGGNATCCCATTCCCGGGGGGATACTGTNGGAGTAACGGTTCAGGTACAAGTAACAGNC]

[+] EMBL BX468390             [GAGGCAAGAATCGGCACGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCATTGAAGAATATTTTACAGCGTGCCATCGGTGATAATTCTTCCGACGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCTGATGGGCTTCTGTCGTGCGAATTGGGATCGGATGCAGCGCTGCAACAAAGGCCCCCAAACGCCCATTGCGTGAGTGCAATTTGCGAATAGTTCAGGGTTATTGTTCCGCTTGATCAACCGCNTAACGCCGAACGGNATCCCATTCCCGGGGGGATACTGTNGGAGTAACGGTTCAGGTACAAGTAACAGNC]




>consensus_1617#1
GAGGCAAGAATCGGCACGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGAC
CGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACC
AACTGGGCGACCGGCCACGGCTGGTCAGGCATTGAAGAATATTTTACAGCGTGCCATCGG
TGATAATTCTTCCGACGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCC
CTACCATGGGTAGGTGAGATTGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACA
ACAAAGACTACTGCGGCTGATGGGCTTCTGTCGTGCGAATTGGGATCGGATGCAGCGCTG
CAACAAAGGCCCCCAAACGCCCATTGCGTGAGTGCAATTTGCGAATAGTTCAGGGTTATT
GTTCCGCTTGATCAACCGCNTAACGCCGAACGGNATCCCATTCCCGGGGGGATACTGTNG
GAGTAACGGTTCAGGTACAAGTAACAGNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1617#0      CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAG 60
consensus_1617#1      -------------------------------------------GAGGCAAGAATCGGCA- 16
                                                                     *    * **  * 

consensus_1617#0      CGATCATGTTGAATTGGAGAGTATTTCT-GTTTGTTACAGTGACCGTGTTTCTCTTTGTG 119
consensus_1617#1      CGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTG 76
                      **     ********************* *******************************

consensus_1617#0      CAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCC 179
consensus_1617#1      CAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCC 136
                      ************************************************************

consensus_1617#0      ACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCG 239
consensus_1617#1      ACGGCTGGTCAGGCA-TTGAAGAATATTTTACAGC-GTGCCATCGGTGATAATTCTTCCG 194
                      *************** ******************* ************************

consensus_1617#0      AACGAGAGCAAAC-AAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAG 298
consensus_1617#1      A-CGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAG 253
                      * *********** **********************************************

consensus_1617#0      GTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACT 358
consensus_1617#1      GTGAGATTGG-CGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACT 312
                      ********** *************************************************

consensus_1617#0      GCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACAC 418
consensus_1617#1      GCGGC-TGATGGGCTTCTGTCGT-GCGAATTGG--GATCG-GAT-GCAGCGCT---GCAA 363
                      ***** ***************** ******* *   **** *** *******     ** 

consensus_1617#0      AAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTT 478
consensus_1617#1      CAAAGGCCCCCAAACGCCC-ATTGCGTGAGTGCAATT----------TGCGAATAG---T 409
                       **** ********* *** * *  *   *** * **           ** ****    *

consensus_1617#0      ACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCAT 538
consensus_1617#1      TCAGGGTTA---TTGTTCCG---CTTGATCAACC--GCNTAA-----CGCCGAACGGNAT 456
                       **** **     *** **     ***  *** *  ******     * *  ***** **

consensus_1617#0      CCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAG 598
consensus_1617#1      CCCATT----CCCGGGGGGATACTGTNGGAGTAACGG----TTCAGGTACAAGTAACAGN 508
                      **** *     *** * * * *   *    *  * **      * **  *** *****  

consensus_1617#0      ATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACAC 658
consensus_1617#1      C----------------------------------------------------------- 509
                                                                                  

consensus_1617#0      CCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAA 718
consensus_1617#1      ------------------------------------------------------------
                                                                                  

consensus_1617#0      CACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAAC 778
consensus_1617#1      ------------------------------------------------------------
                                                                                  

consensus_1617#0      AAGACACNGAGCAACACGAANAAACNCAANNACNCACA 816
consensus_1617#1      --------------------------------------