cluster # 1623

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Anopheles gambiae
cluster # 1623 cluster # 1623 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1623#0 length = 723 sequences # 1

consensus_1623#1 length = 566 sequences # 1

consensusID : consensus_1623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence

                              [CGCAACGCGGACGCGTTTCTTCGTTCGAGTGCATTGTCAAGGGTGTTTCGCGCGTGTGGAAGGGACAGTCCGGTGCAAGAGTGTTGTGTAGAGCAAGTTTATCAATAAATCGAGCCCGATAATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTTCGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTGTCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACGATGTTCCTGCGCGGCTGCAAGCACAGCCTCGAGCGGGCCAAGGAAAAGCTGGACATGTACTACACGGTCCGGACGGCACTGCCCGAGCTGATGCGCAACCGCGATCCGGAGGAGCCGAAGCTGCTGGAGCTGATCAAGATGGGTGTGGCCGTCCCGCTGCCGAACACGGTAACGCCCGACGGGCCGCGGATCATCCTGGTGCGCCCGGGTGTGTACGATCCGAGCAAGTACACCATCCAGGAGGTGTTCCGCTACAACACCATGATGTCTGATATTATGATGAAGGAAGATGACAACCTGGTCGTCGCTGGGCAGATGGGCATTCTGGATCTCTCCAACTGCACCATGGCCCATTTCCTCCAGTTCAGCCCCACGTTCGTGAAGAANGCTACGATGTGGAGTCAGGAANGATCGCCGCTGCGCCAGAANGGNTTCCACTACGT]

[+] EMBL BX627579             [CGCAACGCGGACGCGTTTCTTCGTTCGAGTGCATTGTCAAGGGTGTTTCGCGCGTGTGGAAGGGACAGTCCGGTGCAAGAGTGTTGTGTAGAGCAAGTTTATCAATAAATCGAGCCCGATAATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTTCGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTGTCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACGATGTTCCTGCGCGGCTGCAAGCACAGCCTCGAGCGGGCCAAGGAAAAGCTGGACATGTACTACACGGTCCGGACGGCACTGCCCGAGCTGATGCGCAACCGCGATCCGGAGGAGCCGAAGCTGCTGGAGCTGATCAAGATGGGTGTGGCCGTCCCGCTGCCGAACACGGTAACGCCCGACGGGCCGCGGATCATCCTGGTGCGCCCGGGTGTGTACGATCCGAGCAAGTACACCATCCAGGAGGTGTTCCGCTACAACACCATGATGTCTGATATTATGATGAAGGAAGATGACAACCTGGTCGTCGCTGGGCAGATGGGCATTCTGGATCTCTCCAACTGCACCATGGCCCATTTCCTCCAGTTCAGCCCCACGTTCGTGAAGAANGCTACGATGTGGAGTCAGGAANGATCGCCGCTGCGCCAGAANGGNTTCCACTACGT]




>consensus_1623#0
CGCAACGCGGACGCGTTTCTTCGTTCGAGTGCATTGTCAAGGGTGTTTCGCGCGTGTGGA
AGGGACAGTCCGGTGCAAGAGTGTTGTGTAGAGCAAGTTTATCAATAAATCGAGCCCGAT
AATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTT
CGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTG
TCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACGATGTTCCTGCGCGGCTGCAA
GCACAGCCTCGAGCGGGCCAAGGAAAAGCTGGACATGTACTACACGGTCCGGACGGCACT
GCCCGAGCTGATGCGCAACCGCGATCCGGAGGAGCCGAAGCTGCTGGAGCTGATCAAGAT
GGGTGTGGCCGTCCCGCTGCCGAACACGGTAACGCCCGACGGGCCGCGGATCATCCTGGT
GCGCCCGGGTGTGTACGATCCGAGCAAGTACACCATCCAGGAGGTGTTCCGCTACAACAC
CATGATGTCTGATATTATGATGAAGGAAGATGACAACCTGGTCGTCGCTGGGCAGATGGG
CATTCTGGATCTCTCCAACTGCACCATGGCCCATTTCCTCCAGTTCAGCCCCACGTTCGT
GAAGAANGCTACGATGTGGAGTCAGGAANGATCGCCGCTGCGCCAGAANGGNTTCCACTA
CGT

consensusID : consensus_1623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGAGCGATTGGAGTTCACTAGCCGCGCGGGCTTGCCAATCTGTCAAGTGCCCGCTGCGGGCTGCTTACCGCGGAAGAAGATCTCAGTACGGAGGCCACCATTCCGCAACGCGGACGCGTTTCTTCGGTCGAGTGCATTGTCAAGGGTGTTTCGTGTGTGTGGAAGGGACAGTCCGGTGCAAGAGTGTTGTGTAAAGCAAGGTAAGATAAGCAAGAGGCAAAAAGGGGGACAATTGATTTGCATAAACAACGTGTGTTGTGCCAAACTTGTTGAAGTTTGCTCCAGTGACCGTGAGGAGCTACAGAGTACAGAAATTGGAATCAATTGCCAGCATTATCTTACAAGCACCCAGTTTTCCCCCCCCCCCCTCAAACCCCACCAGCTTATCAATAAATCGAGCCCGATAATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTTCGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTGCCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACG]

[+] EMBL BM607732             [CCGAGCGATTGGAGTTCACTAGCCGCGCGGGCTTGCCAATCTGTCAAGTGCCCGCTGCGGGCTGCTTACCGCGGAAGAAGATCTCAGTACGGAGGCCACCATTCCGCAACGCGGACGCGTTTCTTCGGTCGAGTGCATTGTCAAGGGTGTTTCGTGTGTGTGGAAGGGACAGTCCGGTGCAAGAGTGTTGTGTAAAGCAAGGTAAGATAAGCAAGAGGCAAAAAGGGGGACAATTGATTTGCATAAACAACGTGTGTTGTGCCAAACTTGTTGAAGTTTGCTCCAGTGACCGTGAGGAGCTACAGAGTACAGAAATTGGAATCAATTGCCAGCATTATCTTACAAGCACCCAGTTTTCCCCCCCCCCCCTCAAACCCCACCAGCTTATCAATAAATCGAGCCCGATAATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTTCGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTGCCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACG]




>consensus_1623#1
CCGAGCGATTGGAGTTCACTAGCCGCGCGGGCTTGCCAATCTGTCAAGTGCCCGCTGCGG
GCTGCTTACCGCGGAAGAAGATCTCAGTACGGAGGCCACCATTCCGCAACGCGGACGCGT
TTCTTCGGTCGAGTGCATTGTCAAGGGTGTTTCGTGTGTGTGGAAGGGACAGTCCGGTGC
AAGAGTGTTGTGTAAAGCAAGGTAAGATAAGCAAGAGGCAAAAAGGGGGACAATTGATTT
GCATAAACAACGTGTGTTGTGCCAAACTTGTTGAAGTTTGCTCCAGTGACCGTGAGGAGC
TACAGAGTACAGAAATTGGAATCAATTGCCAGCATTATCTTACAAGCACCCAGTTTTCCC
CCCCCCCCCTCAAACCCCACCAGCTTATCAATAAATCGAGCCCGATAATGCCGAGCCTAA
GACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCGGACGAGCTGTTCGAAAAGCCGGAAC
GCATCGACGAAGATCTGGCCGCGCTGAGGGCCTGGTTGGCCAAGTGCCCGCACATCAAAT
CCCGCACCGATGACCAGTTTCTGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1623#0      CGCAACGCGGACGCGTTTCTTCGTTCGAGTGCATTGTCAAGGGTGTTTCGCGCGTGTGGA 60
consensus_1623#1      --CCGAGCGATTGGAGTTCACTAGCCGCGCGGGCTTGCCAATCTGTCAAGTGCCCGCTGC 58
                        *   ***   *   ***      ** * *   *  * *   ***   * **  *  * 

consensus_1623#0      AGGGACAGTCCGGTGCAAGAGTGTT---GTGTAGAGCAAGTTTATCAATAAATCGAGCCC 117
consensus_1623#1      GGGCTGCTTACCGCGGAAGAAGATCTCAGTACGGAGGCCACCATTCCGCAACGCGGACGC 118
                       **     * * * * ****   *    **   ***        **   **  **  * *

consensus_1623#0      GATAAT---GCCGAGCCTAAGACC---GCTGTCT-GCCCAGCTGGCAAAGAAGG--CGGC 168
consensus_1623#1      GTTTCTTCGGTCGAGTGCATTGTCAAGGGTGTTTCGTGTGTGTGGAAGGGACAGTCCGGT 178
                      * *  *   * ****   *    *   * *** * *      *** *  **  *  *** 

consensus_1623#0      GGACGAGCTGTTCGAAAAGCCGGAACGCATCGACGAAGATCTGGCCGCGCTGAGGGCCTG 228
consensus_1623#1      GCAAGAGTGTTGTGTAAAGCAAGGTAAGATAAGCAAGAGGCAAAAAGGG--GGACAATTG 236
                      * * ***   *  * *****  *     **   * *    *     * *  *      **

consensus_1623#0      GTTGGCCAAGTGTCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACGATGTTCCT 288
consensus_1623#1      ATTTGCATAAACAACGTGTGTTGTGCCAAAC-TTGTTGA--AGTTTGCTCCAGTGACCGT 293
                       ** **  *     **    *     *   *   * ***  *****    *  **  * *

consensus_1623#0      GCGCGGCTGCA-AGCACAGCCTCGAGCGGGCCAAGGAAAAGCTGGACATGTACTACACG- 346
consensus_1623#1      GAGGAGCTACAGAGTACAG----AAATTGG--AATCAATTGCCAGCATTATCTTACAAGC 347
                      * *  *** ** ** ****     *   **  **  **  **  *   * *  **** * 

consensus_1623#0      GTCCGGACGGCACTGCCCGAGCTGATGCGCAACCGCGATCCGGAGGAGCCGAAGCTGCTG 406
consensus_1623#1      ACCCAGTTTTCCCCCCCCCCCCTCAAACCCCACCAGCTTATCAATAAATCGAGCCCGATA 407
                        ** *    * *  ***   ** *  * * ***    *    *  *  ***  * * * 

consensus_1623#0      GAGCTGATCAAGATGGGTGTGGCCGTCCCGCTGCCGAACACGGTAACGCCCGACGGGCCG 466
consensus_1623#1      ATGCCGAGCCTAAGACCGCTGTCTGCCCAGCTGGCAAAGAAGGCGGCG---GACGAGCTG 464
                        ** ** *   *      ** * * ** **** * ** * **   **   **** ** *

consensus_1623#0      CGGATCATCCTGGTGCGCCCGGGTGTGTACGATCCGAGCAAGTACACCATCCAGGAGGTG 526
consensus_1623#1      TTCGAAAAGCCGGAACGCATCGACG---AAGATCTGGCCG-------CGCTGAGGGCCTG 514
                            *  * **  ***   *  *   * **** *  *        *    ***   **

consensus_1623#0      TTCCGCTACAACACCATGATGTCTGATATTATGATGAAGGAAGATGACAACCTGGTCGTC 586
consensus_1623#1      GTTGGCCA-AGTGCCCGCACATCAAATCCCGCACCGATGACCAGTTTCTGACG------- 566
                       *  ** * *   **   *  **  **        ** *     *  *   *        

consensus_1623#0      GCTGGGCAGATGGGCATTCTGGATCTCTCCAACTGCACCATGGCCCATTTCCTCCAGTTC 646
consensus_1623#1      ------------------------------------------------------------
                                                                                  

consensus_1623#0      AGCCCCACGTTCGTGAAGAANGCTACGATGTGGAGTCAGGAANGATCGCCGCTGCGCCAG 706
consensus_1623#1      ------------------------------------------------------------
                                                                                  

consensus_1623#0      AANGGNTTCCACTACGT 723
consensus_1623#1      -----------------