cluster # 1626

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Anopheles gambiae
cluster # 1626 cluster # 1626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1626#0 length = 790 sequences # 1

consensus_1626#1 length = 595 sequences # 1

consensusID : consensus_1626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 790
fasta sequence

                              [CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTGGGTGATGACTTAGTTGTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAACCCCCTCCACGGTGCGTNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGATGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTCCGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGCGCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGCCACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCANACACTTCACACACCAACANCTGNCCCTTCCAAAC]

[+] EMBL AL693101             [CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTGGGTGATGACTTAGTTGTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAACCCCCTCCACGGTGCGTNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGATGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTCCGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGCGCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGCCACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCANACACTTCACACACCAACANCTGNCCCTTCCAAAC]




>consensus_1626#0
CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCT
GGCGGGTGGTGGTGGTGATGCTGGGTGATGACTTAGTTGTTCATCAACATCCCACACGCA
CTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGA
AGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGA
TATATTTGATCCCAATTTAACCCCCTCCACGGTGCGTNTGCGGGACAGGTCCTGTAGATA
AGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAACAAGGGTANAAAGCAAGA
GCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGGCTTGTTTAATATTATTC
TCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGATGTAATAACAAGTTCTGATTCTAT
TTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGCG
GAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTCCGCAGTACGCAANCCGTTTGGGCG
AGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGCGCCAAATTGCCAACCTTGTTAAAG
GAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGCCACTATGGCNCAACGCGAAAGCAG
CACTTCACGCACANAGCGCCATTCTCTCACTNCCANACACTTCACACACCAACANCTGNC
CCTTCCAAAC

consensusID : consensus_1626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTTGTCCATCAACAACCCATACACCCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGGAGACGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCGTTGCGGGACAGGTCCTGTAGATAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAAAAGGTAAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGCTTGTTTAATTTTTCTCTAATTGTGTTTTGGGTGAGAGAGTGGGCGATGTTTTTTGTTTGATTTATTTGAGTGGGTAGGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGA]

[+] EMBL BM581499             [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTTGTCCATCAACAACCCATACACCCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGGAGACGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCGTTGCGGGACAGGTCCTGTAGATAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAAAAGGTAAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGCTTGTTTAATTTTTCTCTAATTGTGTTTTGGGTGAGAGAGTGGGCGATGTTTTTTGTTTGATTTATTTGAGTGGGTAGGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGA]




>consensus_1626#1
CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAA
CAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTT
GTCCATCAACAACCCATACACCCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGACAC
AACACCCATTTTGAACAGAAGCAGTGAGGAGACGTACGCGCGGTGTCCTCGCTGCCTAGT
TCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCGTTGCG
GGACAGGTCCTGTAGATAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAAA
AGGTAAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGCTTG
TTTAATTTTTCTCTAATTGTGTTTTGGGTGAGAGAGTGGGCGATGTTTTTTGTTTGATTT
ATTTGAGTGGGTAGGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1626#0      ------------------------------------------------------------
consensus_1626#1      CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 60
                                                                                  

consensus_1626#0      -----------------CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAA 43
consensus_1626#1      AGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAA 120
                                       **  *     * * **   ************************

consensus_1626#0      CAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTG-----GGTGATGACTTAGTT 98
consensus_1626#1      CAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTT 180
                      ********************************** ** **     ** ************

consensus_1626#0      GTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGA 158
consensus_1626#1      GTCCATCAACAACCCATACAC---CCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGA 237
                      ** ******** **** ** *   *****  **** *  *********************

consensus_1626#0      CACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGC 218
consensus_1626#1      CACAACACCCATTTTGAACAGAAGCAGTGAG-GAGAC-GTACGCGCGGTGTCCTCGCTGC 295
                      ******************************* ***** **********************

consensus_1626#0      CTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAA--CCCCCTCCACGGTGCG 276
consensus_1626#1      CTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCG 355
                      ************************************* ** *  ****************

consensus_1626#0      TNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCG 336
consensus_1626#1      TT-GCGGGACAGGTCCTGTAGATA-GTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCG 413
                      *  ********************* ***********************************

consensus_1626#0      AGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAG 396
consensus_1626#1      AGAAA--AAAGGTAAAA-GCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAG 470
                      *****  ** **** ** ******************************************

consensus_1626#0      CTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGA 456
consensus_1626#1      CTCGAG-CTTGTTTAATTTT--TCTCTAATT---GTGTTTTGGGTGAGAGAGTGG-GCGA 523
                      ****** ********** **  *********   **     ************** ****

consensus_1626#0      TGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACG 516
consensus_1626#1      TGTTTTTT----GTTTGATTTATTTGAGTGGGTAGGG-------AAAAAACCGGGACACG 572
                      ***  *       * *****   **  * ****  **       ****************

consensus_1626#0      CGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTC 576
consensus_1626#1      CGATACGCGCGATTGTACATCGA------------------------------------- 595
                      **********************                                      

consensus_1626#0      CGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGC 636
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      GCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGC 696
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      CACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCAN 756
consensus_1626#1      ------------------------------------------------------------
                                                                                  

consensus_1626#0      ACACTTCACACACCAACANCTGNCCCTTCCAAAC 790
consensus_1626#1      ----------------------------------