cluster # 1641

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Anopheles gambiae
cluster # 1641 cluster # 1641 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1641#0 length = 615 sequences # 1

consensus_1641#1 length = 611 sequences # 1

consensusID : consensus_1641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGTTCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCT]

[+] EMBL BM608284             [CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGTTCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCT]




>consensus_1641#0
CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGT
TCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGG
AGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACA
TGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGC
GCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGG
ACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAA
AGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCG
AAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCA
AACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTA
CGTGTCGGCAGAAGTTCCGCGTGTTCCAGGTCGGCGAAGGCAAATATCGATTCGGTGACT
CCCAGAAGCTTCGCT

consensusID : consensus_1641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [CCGACCGCCACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGAAGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCTTG]

[+] EMBL BM576094             [CCGACCGCCACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGAAGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCTTG]




>consensus_1641#1
CCGACCGCCACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGAAGACACC
CATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTG
GCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTA
CCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCT
CAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGA
TAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGA
CACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACT
GATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAA
GACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCG
GCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGA
AGCTTCGCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1641#0      CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGT 60
consensus_1641#1      ---CCGACCGC----CACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGA 53
                         * *  ***    * *     * * *       **    **       ***  ** * 

consensus_1641#0      TCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGG 120
consensus_1641#1      AGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGG 113
                         *  * * **************************************************

consensus_1641#0      AGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACA 180
consensus_1641#1      AGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACA 173
                      ************************************************************

consensus_1641#0      TGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGC 240
consensus_1641#1      TGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGC 233
                      ************************************************************

consensus_1641#0      GCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGG 300
consensus_1641#1      GCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGG 293
                      ************************************************************

consensus_1641#0      ACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAA 360
consensus_1641#1      ACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAA 353
                      ************************************************************

consensus_1641#0      AGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCG 420
consensus_1641#1      AGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCG 413
                      ************************************************************

consensus_1641#0      AAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCA 480
consensus_1641#1      AAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCA 473
                      ************************************************************

consensus_1641#0      AACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTA 540
consensus_1641#1      AACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTA 533
                      ************************************************************

consensus_1641#0      CGTGTCGGCAGAAGTTCCGCGTGTTCCAGG-TCGGCGAAGGCAAATATCGATTCGGTGAC 599
consensus_1641#1      CGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGAC 593
                      ****************************** *****************************

consensus_1641#0      TCCCAGAAGCTTCGCT-- 615
consensus_1641#1      TCCCAGAAGCTTCGCTTG 611
                      ****************