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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT]
[+] EMBL BM638283 [CCGCCCACGCGTCCGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGTTGCGTTTATCAACCTTGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTTGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTCCTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGTCACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAAACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAAGTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGAATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGTTCATTGATTTTTT]
consensusID : consensus_1648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA]
[+] EMBL AL932729 [ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCACACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACCGCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACGCAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTGCGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGCTAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGAAAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTTTTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1648#0 ------------------------------------------------------------
consensus_1648#1 ATCCCCCGAGGTTAAGTTGATGGTAGGAGAGAAGTTTAGTTTAGATTAACGTGTATCCAC 60
consensus_1648#0 ------------------------------------------------------------
consensus_1648#1 ACTCTTCTCCATAACATAAATAGCACGACGACCCTCGATAAAGTCCGCAAAATACACACC 120
consensus_1648#0 -----------CCGCCCACGCGTCCGGG-TAGGTTTGACACACTCACACACACCTCGACG 48
consensus_1648#1 GCCATCCAGGGCGGGATAATTGCATGGGGTAGGTTTGACACACTCACACACACCTCGACG 180
* * * * *** *******************************
consensus_1648#0 CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 108
consensus_1648#1 CAAACACCTTCCATTAGGAGAAGATTCGATAGGGATTACCAGTTCAGTATTCGGGCGCTG 240
************************************************************
consensus_1648#0 CG-TTGCG-TTTATCAACCTTGG-TGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 165
consensus_1648#1 CGATTGCGCTTTATCAACCTTGGGTGTCTCCTGTGTGTGCATGCTTTCCTGTTAAGCGGC 300
** ***** ************** ************************************
consensus_1648#0 TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTT-TGCCGAACGGTTTATGGA 224
consensus_1648#1 TAGCTTAATTCATTTCCCCACTCGTTTCTTGGTGAACTGTTATGCCGAACGGTTTATGGA 360
***************************************** ******************
consensus_1648#0 AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 284
consensus_1648#1 AAAGGTGGGAGCGAAATTCCGAATGCCATTAATGGATTTCCACCTTAAGTGTGTCTCGTT 420
************************************************************
consensus_1648#0 TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCAAACGTACAACTGCTGTC 344
consensus_1648#1 TTTGTCGCAATCGACACCTCGGTGGAACTTCACAATCAACTCA----------------- 463
*******************************************
consensus_1648#0 CTACGACTGCTTTATTCGTACTACTAATTTACCTTTTTATGTTACTTTTGTACCAACTGT 404
consensus_1648#1 ------------------------------------------------------------
consensus_1648#0 CACGAGATTCCAACGTTGTAACTTAATATTCCACACCGGTTAAATGGCGAGACGGTGGAA 464
consensus_1648#1 ------------------------------------------------------------
consensus_1648#0 ACGGCTCCCCATGCATGCAATAGGCTCTGTTGTCCTTTCTTTTTTCCACTAGGATATAAA 524
consensus_1648#1 ------------------------------------------------------------
consensus_1648#0 GTGCATTTTGGTTGCAACGTGGGAACAGCTAACACTAGTTTAGAGGAGAGGAAAATAGGA 584
consensus_1648#1 ------------------------------------------------------------
consensus_1648#0 ATTTTTGCATCCATTCTTGCCTCTTTTTTTTTTACTCATCATAATCGCACATTTTCACGT 644
consensus_1648#1 ------------------------------------------------------------
consensus_1648#0 TCATTGATTTTTT 657
consensus_1648#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||