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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 750 fasta sequence
[CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA]
[+] EMBL BX625556 [CGTGATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAGCCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTTCGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCATTTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAGCCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTGTACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGCGAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACCCGACCGCCTGTCAAACCGCACCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCCCGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCA]
consensusID : consensus_1654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence
[ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC]
[+] EMBL AL933152 [ATCGCCGAGGTTAACGAGGTCCATCACGATGACACCGATGTCGAGCAGCCGACTATGGTAATCGGGACGCGGCTCTANAGAGGGTTGCGGTCCTATTTCCACCAACCAAATTTGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTTCAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTCCGAAAGCGTACCGGGAACTGTCACAAGGGGACCATGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTATGTCGACGGTCTAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTAGATTTCAGCTCAGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGGTGCATGCGGCTAATGCCCCGTGGTGAGAGATGTCTTCGACCGGAGCAGAACCGTTCAGCCGTGTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACACACTAGCAGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1654#0 --CGT-GATGTTCACGACGGGCAGCTTCGTCGTGACGTGGGTGCCGTACTTCATCGCGAG 57
consensus_1654#1 ATCGCCGAGGTTAACGAGGTCCA---TCACGATGACACCGATGTCGAGC---------AG 48
** ** *** **** * ** ** **** * ** ** * **
consensus_1654#0 CCTGCTGTACGTCGGGTGCGACCCGGCCACGAACGAGGAGCTGTGCCGCAGCCTGCAGTT 117
consensus_1654#1 CCGACT--ATGGTAATCGGGACGCGGCT-CTANAGAGG------GTTGCGGTCCTATTTC 99
** ** * * * *** **** * * **** * ** * * *
consensus_1654#0 CGCCATCGCCAGCCCGCTCGCCATCCTCGGGTTCGCCAACAGTCTGCTCAATCCAATCAT 177
consensus_1654#1 CACCAAC-CAAATTTGCTACCCAGCTCAGGGAAAATTGTCAG-CAGCTTCAAAGAACAGC 157
* *** * * * *** *** * *** *** * *** * **
consensus_1654#0 TTACGCCTGGTGGCACAATGGGTTCCGCGCCTCGATGAAGCGGCTCGCCGGCAAGGTCAG 237
consensus_1654#1 GCAAAAATGTTGCTTCAA-AAGTTGGGCGCCCCTGTC---CCTCCCTCCTTCTTGG--AA 211
* ** ** *** *** ***** * * * * * ** * ** *
consensus_1654#0 CCAGCGGATCTGCTGCTGCTGCGGCGGCGGCGACACTGGAGACGGTGGTGCGGGCCGGTG 297
consensus_1654#1 GTGGCTGACACCGTATGACTCCGAAAGCG----TACCGGGAACTGTCACAAGGGG----- 262
** ** * ** ** *** ** ** ** ** ***
consensus_1654#0 TACCGCTGTACGCTGCTGCCATAAATCATCGCGCTCGGCGCCACCATCGGCCTCGGTGGC 357
consensus_1654#1 -ACCA-TGTGCCCAGAGCAAACGGGCAAAGAAGAACGAAGCCCTTAT-GTCGACGGT--C 317
*** *** * * * * * * ** *** ** * * **** *
consensus_1654#0 GAATCGGATCAGTGCCAATGGGGTTAGCAGCACGGGCAGCACCAGCGATGGCATCGGACC 417
consensus_1654#1 TAGCGAAATTGGCAGCAAAGGGGGGGGAAAAGCGAAATGGAGAATTA--GATTTCAGCTC 375
* ** * *** **** * * ** * * * * ** * *
consensus_1654#0 CGACCGCCTGTCAAACCGCA-CCGTCACAACGACGGTCGGCCAGCGGGCGCACCCGGTCC 476
consensus_1654#1 AGCACGCGTGTGTAGCCACGGTCCTTTCGCCGACGTTACACATGCGG-TGCATGCGG-CT 433
* *** *** * ** * * * * ***** * * **** *** *** *
consensus_1654#0 CGTACCCCCACAGCGACCAGGAATTTTCCATCACCGATGACACCGATGTCGAGCAGCCGA 536
consensus_1654#1 AATGCCCC----GTGGTGAGAGAT-----GTCTTCGACCGGAGCAGAACCGTTCAGCCGT 484
* **** * * ** ** ** *** * * ** ******
consensus_1654#0 CTATGGTAATCGGGACGCGGCTCTAGAGAGGGTTGCGGTCCTATTTCCACCACCCAAATT 596
consensus_1654#1 GTGTCGTTTTTTTTATGCAGCTGCTCGCATGGCAAGCGTCACA----CACTAGCAGGAC- 539
* * ** * * ** *** * ** *** * *** * * *
consensus_1654#0 TGCTACCCAGCTCAGGGAAAATTGTCAGCAGCTTCAAAGAACAGCGCAAAAATGTTGCTT 656
consensus_1654#1 ------------------------------------------------------------
consensus_1654#0 CAAAAGTTGGGCGCCCCTGTCCCTCCCTCCTTCTTGGAAGTGGCTGACACCGTATGACTC 716
consensus_1654#1 ------------------------------------------------------------
consensus_1654#0 CGAAAGCGTACCGGGAACTGTCACAAGGGGACCA 750
consensus_1654#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||