cluster # 1667

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Anopheles gambiae
cluster # 1667 cluster # 1667 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1667#0 length = 762 sequences # 1

consensus_1667#1 length = 626 sequences # 1

consensusID : consensus_1667#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 762
fasta sequence

                              [CCCGAGGTTTATTCTATAGCAGTTGCCTACTGGGNCTGACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCGTCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCACGGTCGCATCAACAACGGTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCGCGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCGGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCACCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGCCAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCCCATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG]

[+] EMBL AL693407             [CCCGAGGTTTATTCTATAGCAGTTGCCTACTGGGNCTGACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCGTCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCACGGTCGCATCAACAACGGTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCGCGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCGGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCACCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGCCAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCCCATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG]




>consensus_1667#0
CCCGAGGTTTATTCTATAGCAGTTGCCTACTGGGNCTGACGATCGTCAGCGTCGTTGCCT
GCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTACGTC
CGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCGTCGAACGTTATT
TGGAACGGGTGGCCCCTGCTCCGGAGCGCACGGTCGCATCAACAACGGTGTCATCGTCGG
TCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGAACATACTT
CTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGG
CCAGACGTCATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCGCGCAGGACTTTGTC
GTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTC
GCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTT
CCCCGCGGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCACCATCCAGTGGCTGG
GGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGCCAGCTTCGTTCGGAT
GCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCCCATTATATACTGAGA
TCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG

consensusID : consensus_1667#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCGTCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACGGTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCGCGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCACCATCAGTGGCTGGGGTGAGACGGCT]

[+] EMBL BM578923             [CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCGTCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACGGTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCGCGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCACCATCAGTGGCTGGGGTGAGACGGCT]




>consensus_1667#1
CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCA
GCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGG
CTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCG
TCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACG
GTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGC
AGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGA
CGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCG
CGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCC
AGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTC
AACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCA
CCATCAGTGGCTGGGGTGAGACGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1667#0      ---------CCCGAGGTTTATTC-TAT-AGCAGTTGCC-TACTGGGNCTGACGATCGTCA 48
consensus_1667#1      CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCA 60
                               *  * *    **** *** ********** ******* ** **********

consensus_1667#0      GCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGG 108
consensus_1667#1      GCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGG 120
                      ************************************************************

consensus_1667#0      CTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCG 168
consensus_1667#1      CTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCG 180
                      ******* ************** ** ******************** ** **********

consensus_1667#0      TCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCAC-GGTCGCATCAACAACG 227
consensus_1667#1      TCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACG 240
                      ******* ************* ********************* ****************

consensus_1667#0      GTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGC 287
consensus_1667#1      GTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGC 300
                      ***** **************** *************************************

consensus_1667#0      AGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGA 347
consensus_1667#1      AGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGA 360
                      **** ** ****************************************************

consensus_1667#0      CGTGTGTCGAAGGCCAGACGTC-ATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCG 406
consensus_1667#1      CGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCG 420
                      ********************** ******** ************** ** **********

consensus_1667#0      CGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCC 466
consensus_1667#1      CGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCC 480
                      ******************* ****************************************

consensus_1667#0      AGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTC 526
consensus_1667#1      AGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTC 540
                      ************************************************************

consensus_1667#0      AACTGGCACGTCTTCCCCGC-GGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCA 585
consensus_1667#1      AACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCA 600
                      ******************** ********************* *****************

consensus_1667#0      CCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGC 645
consensus_1667#1      CCATC-AGTGGCTGGGGT-GAGACGGCT-------------------------------- 626
                      ***** ************ *********                                

consensus_1667#0      CAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCC 705
consensus_1667#1      ------------------------------------------------------------
                                                                                  

consensus_1667#0      CATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG 762
consensus_1667#1      ---------------------------------------------------------