cluster # 1674

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Anopheles gambiae
cluster # 1674 cluster # 1674 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1674#0 length = 937 sequences # 1

consensus_1674#1 length = 691 sequences # 1

consensusID : consensus_1674#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 937
fasta sequence

                              [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG]

[+] EMBL CNS08IXB             [TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG]




>consensus_1674#0
TACGCAATTTTTTTTTTTGTTAGATCTTATACCTCAAAAAGCAATGTTATGAAATAGTAT
TTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTT
TTCGTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTG
TTTTGTTCGTACGCAAAAGCACTAAACCGATTACAGCGTGCACCGAGCGGAAGTAAACAC
ACCGCCTCCGATTACAACGATGTTGCGCTGTTTGAATGCCGTTCCTTGGTGCGGAACTTC
AGCATCGATGCAAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTG
TACCATATGAAGAAAATAATAAAAGCTTCCGGTACGTGCTGGGCGAAAGTGTCGAAGGGC
CCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGATGCGGAGGGAA
AGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTA
CGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGA
CCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAACTGGAGGGATGCCTTTCTAGAGC
TGAAAGGCGAGCACGTGAGTACGGTGTGTCCTATCCCGGGCGATGCGATTGCGGTGGACA
CGGTGGAGAGAGCGCGAGAGGTTATTAAGTTCCTTAGCTTGGAGAATATAATTCCCGACA
CGCTAGTATGCGTGAAAGCACGCTGGAACGAGGACAAACGGGAGCTCTTTATACCACTGG
TGGACGTGGAGGATCGGGCGATCGGTTACAAGACGCTCCACGTGGGTTCCGATGGAGAAG
TATTTGAACGTACCGTGCCAGAAACGAATGCCAGCGG

consensusID : consensus_1674#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT]

[+] EMBL BM606834             [CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATACCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATATTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGATGTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGATTACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGTTCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATGGACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCGGTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGTGTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAATTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGTGGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGTTGCGCAAGCTGAGGGATGCCTTTCTCGAGCT]




>consensus_1674#1
CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATA
CCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA
TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGAT
GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGAT
TACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGT
TCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATG
GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG
GTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT
GTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA
TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT
GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT
TGCGCAAGCTGAGGGATGCCTTTCTCGAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1674#0      -----------------------------TACGCAATTTTTTTTTTTGTTAGATCTTATA 31
consensus_1674#1      CCGCTTTCCAGCAGCTCGCTTTGTTGCCGTTTGAAGATAGTTTTTTTGTTAGATCTTATA 60
                                                   *  * *  *  ********************

consensus_1674#0      CCTCAAAAAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 91
consensus_1674#1      CCTCAAAGAGCAATGTTATGAAATAGTATTTGTAACTAATTTTGTATTTCGAATCGAATA 120
                      ******* ****************************************************

consensus_1674#0      TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCGTAACGCCACGTAACGGCCGACTGTGAT 151
consensus_1674#1      TTCTGTTAGCATTTTCCACTCCCTCTCTTTTCCTAACGCCACGTAACGGCCGACTGTGAT 180
                      ******************************** ***************************

consensus_1674#0      GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCACTAAACCGAT 211
consensus_1674#1      GTTAGTGCGTAATGCTCGTGAAGCGTCTGTTTTGTTCGTACGCAAAAGCATTGAACCGAT 240
                      ************************************************** * *******

consensus_1674#0      TACAGCGTGCACCGAGCGGAAGTAAACACACCGCCTCCGATTACAACGATGTTGCGCTGT 271
consensus_1674#1      TACAGCGTGCACCGAGCGCTAGTAAACACACCTCCTCCGATTACAACGATGTTGCGCCGT 300
                      ******************  ************ ************************ **

consensus_1674#0      TTGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCAAACCACCCACCCGACGATG 331
consensus_1674#1      TCGAATGCCGTTCCTTGGTGCGGAACTTCAGCATCGATGCGAACCACCCACCCGACGATG 360
                      * ************************************** *******************

consensus_1674#0      GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 391
consensus_1674#1      GACAAAAGCCGGTAACGACGGTGTCACTGTACCATATGAAGAAAATAATAAAAGCTTCCG 420
                      ************************************************************

consensus_1674#0      GTACG-TGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 450
consensus_1674#1      GTACGGTGCTGGGCGAAAGTGTCGAAGGGCCCACCTGCATACAGACGGTGTGTCCCGTGT 480
                      ***** ******************************************************

consensus_1674#0      GTCACGTCGTACCGGGGGATGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 510
consensus_1674#1      GTCACGTCGTACCGGGGGGTGCGGAGGGAAAGCCCATCAGCGACGCGATACGGAGGAAAA 540
                      ****************** *****************************************

consensus_1674#0      TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 570
consensus_1674#1      TTTTTGTGAACAAAACGACGGGCAATTTTACGTGCTCGTCGTGCCAGTATCTCGGCCGGT 600
                      ************************************************************

consensus_1674#0      GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 630
consensus_1674#1      GGGATCATATAGAGAAGTTTTTCCCACCGACCAGCCGGACGCCGAAGACGGTGCAGGAGT 660
                      ************************************************************

consensus_1674#0      TGCGCAACTGGAGGGATGCCTTTCTAGAGCTGAAAGGCGAGCACGTGAGTACGGTGTGTC 690
consensus_1674#1      TGCGCAAGCTGAGGGATGCCTTTCTCGAGCT----------------------------- 691
                      *******   *************** *****                             

consensus_1674#0      CTATCCCGGGCGATGCGATTGCGGTGGACACGGTGGAGAGAGCGCGAGAGGTTATTAAGT 750
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      TCCTTAGCTTGGAGAATATAATTCCCGACACGCTAGTATGCGTGAAAGCACGCTGGAACG 810
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      AGGACAAACGGGAGCTCTTTATACCACTGGTGGACGTGGAGGATCGGGCGATCGGTTACA 870
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      AGACGCTCCACGTGGGTTCCGATGGAGAAGTATTTGAACGTACCGTGCCAGAAACGAATG 930
consensus_1674#1      ------------------------------------------------------------
                                                                                  

consensus_1674#0      CCAGCGG 937
consensus_1674#1      -------