cluster # 1678

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Anopheles gambiae
cluster # 1678 cluster # 1678 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1678#0 length = 602 sequences # 1

consensus_1678#1 length = 512 sequences # 1

consensusID : consensus_1678#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCAAGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCACAGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAAAGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGAGAGTGATGGGGGGAGGGGGTTATAAGGATGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAAATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGT]

[+] EMBL BX614955             [GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCAAGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCACAGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAAAGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGAGAGTGATGGGGGGAGGGGGTTATAAGGATGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAAATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGT]




>consensus_1678#0
GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCA
AGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCAC
AGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAA
AGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAG
AGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAG
CGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGAG
AGTGATGGGGGGAGGGGGTTATAAGGATGAGAAAGAAAGAAAATAGATCAGTCAAATTGC
AGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAG
TGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAAATCGAATG
AAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGAT
GT

consensusID : consensus_1678#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CGCGTCCGGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGAGAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAAATTGAATGAAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCGCCGGGGCGATAGTCAGAGTAAAGAAGAGAGC]

[+] EMBL BM634481             [CGCGTCCGGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGAGAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAAATTGAATGAAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCGCCGGGGCGATAGTCAGAGTAAAGAAGAGAGC]




>consensus_1678#1
CGCGTCCGGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAA
AGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGG
AAGAGAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGAT
CAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAA
GTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGA
AGAAATTGAATGAAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAA
ATGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACC
GCCGGGGCGATAGTCAGAGTAAAGAAGAGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1678#0      GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCA 60
consensus_1678#1      ------------------------------------------------------------
                                                                                  

consensus_1678#0      AGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCAC 120
consensus_1678#1      ------------------------------------------------------------
                                                                                  

consensus_1678#0      AGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAA 180
consensus_1678#1      ---------------------------------------------------CGCGTCCGG 9
                                                                                  

consensus_1678#0      AGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAG 240
consensus_1678#1      CTTTTTCTGCTGATAAAGAGAGGGAG-----GAGAGAGAGAGATAGAGAAAGAGAAAGTG 64
                         *      * * * ****** ***     ********** * ***** ******** *

consensus_1678#0      AGAGAGAAAGAGAAAGAGAGAG-AGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGA 299
consensus_1678#1      AGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 124
                      ******* ************ * ******* ***** ******* ***************

consensus_1678#0      GCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGA 359
consensus_1678#1      ACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGA 184
                       * ****** **************************************** *********

consensus_1678#0      GA------GTGATGGGGGGAGGGG-GTTATAAGGATGAGAAAGAAAGAAAATAGATCAGT 412
consensus_1678#1      GAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGT 244
                      **      ************ *** ********* *************************

consensus_1678#0      CAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTAT 472
consensus_1678#1      CAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTAT 304
                      ************************************************************

consensus_1678#0      AGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAA 532
consensus_1678#1      AGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAA 364
                      ***************************************************** ******

consensus_1678#0      ATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAA 592
consensus_1678#1      ATTGAATGAAAGAAGAA---CTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAA 421
                      ** **************   ****************************************

consensus_1678#0      TGGCCGATGT-------------------------------------------------- 602
consensus_1678#1      TGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCG 481
                      **********                                                  

consensus_1678#0      -------------------------------
consensus_1678#1      CCGGGGCGATAGTCAGAGTAAAGAAGAGAGC 512