cluster # 1679

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Anopheles gambiae
cluster # 1679 cluster # 1679 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1679#0 length = 677 sequences # 1

consensus_1679#1 length = 658 sequences # 1

consensusID : consensus_1679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGACTCCATGCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAAAATGTGTTCAAATCATTCGGCTTGCAAAGAAACAAATGGAAATCCTTGATCGATACAAGTAACAGTTCAAATAGCCATATAGCAATGCATTCATTCAGCTTCGTTCGCTGCCCTTTAGATAGGCTCGGCAATAGAAACGGTATTCTTTTCCAGGACATTCACGCCACGGCGGGAGCAATCGTTGCAACCCTCCCCTTTTAAAGACTCTTTACACTCCAGATGCCTTATCAAACATTATAACAATATATGAAGGTGTAAACATTGTTCTCTCGAGCGCTTTACATGTGCAAAACCCTTGTCTGAAAAATGGCGCCGGGTATATTTATCATGCAATCATCACGGATCACGGAAAACCGCGCTAGTACTATCAACCACCACAACGATATCTGCACGATCTTTATCCATCCTCTTAGCTGATTAGCGTAACGCCTTTGATGTTTTAGTATTTTTCTAGCGTGTAAGGTCAGAGTCGAATTCGTCCATTTTCTTTTATTTCGTACTGTTCATTTTAAACCTTGAAGGAATCGAGGACACAACTCACGTGTGCTGCTGGAAGGCGGCGTGTGCAGCAGCTGCA]

[+] EMBL BM633194             [CCGGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGACTCCATGCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAAAATGTGTTCAAATCATTCGGCTTGCAAAGAAACAAATGGAAATCCTTGATCGATACAAGTAACAGTTCAAATAGCCATATAGCAATGCATTCATTCAGCTTCGTTCGCTGCCCTTTAGATAGGCTCGGCAATAGAAACGGTATTCTTTTCCAGGACATTCACGCCACGGCGGGAGCAATCGTTGCAACCCTCCCCTTTTAAAGACTCTTTACACTCCAGATGCCTTATCAAACATTATAACAATATATGAAGGTGTAAACATTGTTCTCTCGAGCGCTTTACATGTGCAAAACCCTTGTCTGAAAAATGGCGCCGGGTATATTTATCATGCAATCATCACGGATCACGGAAAACCGCGCTAGTACTATCAACCACCACAACGATATCTGCACGATCTTTATCCATCCTCTTAGCTGATTAGCGTAACGCCTTTGATGTTTTAGTATTTTTCTAGCGTGTAAGGTCAGAGTCGAATTCGTCCATTTTCTTTTATTTCGTACTGTTCATTTTAAACCTTGAAGGAATCGAGGACACAACTCACGTGTGCTGCTGGAAGGCGGCGTGTGCAGCAGCTGCA]




>consensus_1679#0
CCGGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGAC
TCCATGCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAAAATGTGTTCAAATCATTCGG
CTTGCAAAGAAACAAATGGAAATCCTTGATCGATACAAGTAACAGTTCAAATAGCCATAT
AGCAATGCATTCATTCAGCTTCGTTCGCTGCCCTTTAGATAGGCTCGGCAATAGAAACGG
TATTCTTTTCCAGGACATTCACGCCACGGCGGGAGCAATCGTTGCAACCCTCCCCTTTTA
AAGACTCTTTACACTCCAGATGCCTTATCAAACATTATAACAATATATGAAGGTGTAAAC
ATTGTTCTCTCGAGCGCTTTACATGTGCAAAACCCTTGTCTGAAAAATGGCGCCGGGTAT
ATTTATCATGCAATCATCACGGATCACGGAAAACCGCGCTAGTACTATCAACCACCACAA
CGATATCTGCACGATCTTTATCCATCCTCTTAGCTGATTAGCGTAACGCCTTTGATGTTT
TAGTATTTTTCTAGCGTGTAAGGTCAGAGTCGAATTCGTCCATTTTCTTTTATTTCGTAC
TGTTCATTTTAAACCTTGAAGGAATCGAGGACACAACTCACGTGTGCTGCTGGAAGGCGG
CGTGTGCAGCAGCTGCA

consensusID : consensus_1679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [CGCCGAGGNTTTAAGCACTGAAGACTCTGCACAACAGTCCCGAGTTTATGCCGTTCGTGTTGTTTATTTGCGGCACCGGGAATGGAGCAGCTAAAGCTGCTGTACTCCGAGCGCAGATCTGGCCAGTGGATCTGACGAGGAACTTGCATTTTGATCGTCAAAGCTCTATACGCTTCAGCTCCCGTCGTGCAAAGACTCTGGAATCGTTGGCATCGCTGTATGAGGACGATGATTTGATATCGGCGGTCGAGGAGAGTGCACTGCTCCAGCGAAAGTACGACAAGTACCTGGACATGGTCATTGTGAACGAAGACTTCGATGACACATTACCGCCAGGTGACGGAAGCGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGACTCCATGCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAAAATGTGTCTCACAATCATTCGGCTTGCCNCGAAACAAATGGCAAATCCTTGACCGATACAACGTAACAGTTCACATAGCCATATAGCATTCANTCTCAGNNTATCGCTTCGCTGCNCCTTTAGNATAGGCTCGGCAANAAGCAAACGGCANATCCCTCCNCCACCAACNCACACTACACGTCCGCGNGACGGAGAGCATTCGGTATGCAAATNC]

[+] EMBL AL693468             [CGCCGAGGNTTTAAGCACTGAAGACTCTGCACAACAGTCCCGAGTTTATGCCGTTCGTGTTGTTTATTTGCGGCACCGGGAATGGAGCAGCTAAAGCTGCTGTACTCCGAGCGCAGATCTGGCCAGTGGATCTGACGAGGAACTTGCATTTTGATCGTCAAAGCTCTATACGCTTCAGCTCCCGTCGTGCAAAGACTCTGGAATCGTTGGCATCGCTGTATGAGGACGATGATTTGATATCGGCGGTCGAGGAGAGTGCACTGCTCCAGCGAAAGTACGACAAGTACCTGGACATGGTCATTGTGAACGAAGACTTCGATGACACATTACCGCCAGGTGACGGAAGCGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGACTCCATGCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAAAATGTGTCTCACAATCATTCGGCTTGCCNCGAAACAAATGGCAAATCCTTGACCGATACAACGTAACAGTTCACATAGCCATATAGCATTCANTCTCAGNNTATCGCTTCGCTGCNCCTTTAGNATAGGCTCGGCAANAAGCAAACGGCANATCCCTCCNCCACCAACNCACACTACACGTCCGCGNGACGGAGAGCATTCGGTATGCAAATNC]




>consensus_1679#1
CGCCGAGGNTTTAAGCACTGAAGACTCTGCACAACAGTCCCGAGTTTATGCCGTTCGTGT
TGTTTATTTGCGGCACCGGGAATGGAGCAGCTAAAGCTGCTGTACTCCGAGCGCAGATCT
GGCCAGTGGATCTGACGAGGAACTTGCATTTTGATCGTCAAAGCTCTATACGCTTCAGCT
CCCGTCGTGCAAAGACTCTGGAATCGTTGGCATCGCTGTATGAGGACGATGATTTGATAT
CGGCGGTCGAGGAGAGTGCACTGCTCCAGCGAAAGTACGACAAGTACCTGGACATGGTCA
TTGTGAACGAAGACTTCGATGACACATTACCGCCAGGTGACGGAAGCGCTAGAGCAGCTG
TCACACGAGCACCAGTGGGTCCCGGTAAACTGGATCTACTAGACTCCATGCGTCCGTCTG
CTCGGATGCAGATCTGCAAAACAAAATGTGTCTCACAATCATTCGGCTTGCCNCGAAACA
AATGGCAAATCCTTGACCGATACAACGTAACAGTTCACATAGCCATATAGCATTCANTCT
CAGNNTATCGCTTCGCTGCNCCTTTAGNATAGGCTCGGCAANAAGCAAACGGCANATCCC
TCCNCCACCAACNCACACTACACGTCCGCGNGACGGAGAGCATTCGGTATGCAAATNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1679#0      -------------CCGGCTAGAGCAGCTGTCACACGAGCACCAGTGGGTCCCGGTAAACT 47
consensus_1679#1      CGCCGAGGNTTTAAGCACTGAAGACTCTGCACAACAGTCCCGAGTTTATGCCGTTCGTGT 60
                                       **  **   ***    **   * * ***   * *** *    *

consensus_1679#0      GGATCTACTA-GACTCCATGCGTCCGTCTGCTCGGA-TGCAGATCTGCAAAACAAAATGT 105
consensus_1679#1      TGTTTATTTGCGGCACCGGGAATGGAGCAGCTAAAGCTGCTGTACTCCGAGCGCAGATCT 120
                       * *    *  * * **  *  *    * ***     *** *  ** * *    * ** *

consensus_1679#0      GTTCAAATCATTCGGCTTGCAAAGAAACAAATGGAAATCCTTGATCGATACAAGTAACAG 165
consensus_1679#1      GGCCAGTGGATCTGACGAGGAACTTGCATTTTGATCGTCAAAGCTCTATAC--GCTTCAG 178
                      *  **    **  * *  * **         **    **   * ** ****  *   ***

consensus_1679#0      TTCAAATAGCCATATAGCAATGCATTCATT--CAGCTTCGTTCGCTGCCCTTTAGATAGG 223
consensus_1679#1      CTCCCGTCGTGCAAAGACTCTGGAATCGTTGGCATCGCTGTATGAGGACGATGATTTGAT 238
                       **   * *    *   *  ** * ** **  ** *   **  *  * *  * *  *   

consensus_1679#0      CTCGGCAATAGAAACG-GTATTCTTTTCCAGGACATTCACGCCACGG---CGGGAGCAAT 279
consensus_1679#1      ATCGGCGGTCGAGGAGAGTGCACTGCTCCAGCGAAAGTACGACAAGTACCTGGACATGGT 298
                       *****  * **   * **   **  *****   *   *** ** *     **      *

consensus_1679#0      CGTTGCAACCCTCCCCTTTTAAAGACTCTTTACACTCCAGATGCCTTATCAAACATTATA 339
consensus_1679#1      CATTGTGAACGAAGACTTC-GATGACACATTAC-CGCCAGGTGACGGA---AGCGCTAGA 353
                      * ***  * *     ***   * *** * **** * **** ** *  *   * *  ** *

consensus_1679#0      ACAATATATGAAGGTGTAAACATTGTTCTCTCGAGCGCTTTACATGTGCAAAACCCTTGT 399
consensus_1679#1      GCAGCTGTCACACGAGCACCAGTGGGTCCC---GGTAAACTGGATCTACTAGACTCC-AT 409
                       **        * * * *    * * ** *    *     *  ** * * * ** *   *

consensus_1679#0      CTGAAAAATGGCGCCGG-GTATATTTATCATGCAATCATCACGGATCACGGAAAACCGCG 458
consensus_1679#1      GCGTCCGTCTGCTCGGATGCAGATCTGCAAAACAA--AATGTGTCTCACAATCATTCGGC 467
                        *       ** * *  * * ** *   *  ***  *    *  ****    *  **  

consensus_1679#0      CTAGTACTAT-CAACCACCACAACGATATCTGCACGATCTTTATCCATCCTCTTAGCTGA 517
consensus_1679#1      TTGCCNCGAAACAAATGGCAAATCCTTGACCG-ATACAACGTAACAGTTCACATAGCCAT 526
                       *    * *  ***    ** * *  *  * * *       ** *  * * * ****   

consensus_1679#0      TTAGCGTAACGCCTTTGAT----GTTTTAGTATTTTTCTAGCGT--GTAAGGTCAGAGTC 571
consensus_1679#1      ATAGCATTCANTCTCAGNNTATCGCTTCGCTGCNCCTTTAGNATAGGCTCGGCAANAAGC 586
                       **** *     **  *      * **   *     * ***  *  *   **  * *  *

consensus_1679#0      GAATT---CGTCCATTTTCTTTTATTTCGTACTGTTCATTTTAAACCTTGAAGGAATCGA 628
consensus_1679#1      AAACGGCANATCCCTCCNCCACCAACNCACACTACACGTCCGCGNGACGGAGAGCATTCG 646
                       **       *** *   *    *   *  ***   * *          **  * **   

consensus_1679#0      GGACACAACTCACGTGTGCTGCTGGAAGGCGGCGTGTGCAGCAGCTGCA 677
consensus_1679#1      GTATGCAAATNC------------------------------------- 658
                      * *  *** *