cluster # 1683

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Anopheles gambiae
cluster # 1683 cluster # 1683 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1683#0 length = 589 sequences # 1

consensus_1683#1 length = 538 sequences # 1

consensusID : consensus_1683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [GCCGTGATCTGCGTTAGCCGGGTGTACCTAGGCATGCACAGTGTGTTGGACATTGTCGCAGGACTGGTGCTGGTCGTACTGTTGATGATCCCCCTAATTCCGATCGTAGATCGATTGGACCTTGTAATAGTGACTTCCCGCTGGTCGCCAATATTCGTGCTCTCGATATCGATACTACTGATCGTGTTCTATCCCGATCCGGGTAAATGGACCCCAACGCGCGGCGATACCGCTCTTACGGTAAGCGTTTGCGCTGGCATCGAGCTCGGCGCCTGGTTGCACTACCATTTGGGCGAGTTTCAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGCCTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCCAAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGCCAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTGTTCACGTACGGTGTGATCGGGTTCCACACCCAGTACCTGCTGCCGAGCG]

[+] EMBL BX618556             [GCCGTGATCTGCGTTAGCCGGGTGTACCTAGGCATGCACAGTGTGTTGGACATTGTCGCAGGACTGGTGCTGGTCGTACTGTTGATGATCCCCCTAATTCCGATCGTAGATCGATTGGACCTTGTAATAGTGACTTCCCGCTGGTCGCCAATATTCGTGCTCTCGATATCGATACTACTGATCGTGTTCTATCCCGATCCGGGTAAATGGACCCCAACGCGCGGCGATACCGCTCTTACGGTAAGCGTTTGCGCTGGCATCGAGCTCGGCGCCTGGTTGCACTACCATTTGGGCGAGTTTCAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGCCTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCCAAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGCCAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTGTTCACGTACGGTGTGATCGGGTTCCACACCCAGTACCTGCTGCCGAGCG]




>consensus_1683#0
GCCGTGATCTGCGTTAGCCGGGTGTACCTAGGCATGCACAGTGTGTTGGACATTGTCGCA
GGACTGGTGCTGGTCGTACTGTTGATGATCCCCCTAATTCCGATCGTAGATCGATTGGAC
CTTGTAATAGTGACTTCCCGCTGGTCGCCAATATTCGTGCTCTCGATATCGATACTACTG
ATCGTGTTCTATCCCGATCCGGGTAAATGGACCCCAACGCGCGGCGATACCGCTCTTACG
GTAAGCGTTTGCGCTGGCATCGAGCTCGGCGCCTGGTTGCACTACCATTTGGGCGAGTTT
CAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGC
CTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCC
AAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGC
CAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTG
TTCACGTACGGTGTGATCGGGTTCCACACCCAGTACCTGCTGCCGAGCG

consensusID : consensus_1683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [ATGGTAGTGCAACCAGGCGCCGAGCTCGATGCCAGCGCAAACGCTTACCGTAAGAGCGGTATCGCCGCGCGTTGGGGTCCATTTACCCGGATCGGGATAGAACACGATCAGTAGTATCGATATCGAGAGCACGAATATTGGCGAGTTTCAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGCCTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCCAAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGCCAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTGTTCACGTACGGTGTGATCGGGTTCAACACCCAGTACCTGCTGCCGAGCGTCTTTAAGCTGCTCAACATCGGCCGGCCCGATTTCTACACCGAAATCTAAACCCCATTCCAGCCATCCAGAGCACCCACACGCACGCACCGGTGTATGCGG]

[+] EMBL BX628106             [ATGGTAGTGCAACCAGGCGCCGAGCTCGATGCCAGCGCAAACGCTTACCGTAAGAGCGGTATCGCCGCGCGTTGGGGTCCATTTACCCGGATCGGGATAGAACACGATCAGTAGTATCGATATCGAGAGCACGAATATTGGCGAGTTTCAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGCCTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCCAAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGCCAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTGTTCACGTACGGTGTGATCGGGTTCAACACCCAGTACCTGCTGCCGAGCGTCTTTAAGCTGCTCAACATCGGCCGGCCCGATTTCTACACCGAAATCTAAACCCCATTCCAGCCATCCAGAGCACCCACACGCACGCACCGGTGTATGCGG]




>consensus_1683#1
ATGGTAGTGCAACCAGGCGCCGAGCTCGATGCCAGCGCAAACGCTTACCGTAAGAGCGGT
ATCGCCGCGCGTTGGGGTCCATTTACCCGGATCGGGATAGAACACGATCAGTAGTATCGA
TATCGAGAGCACGAATATTGGCGAGTTTCAGCAACCGGCACAGCCACCACCGTACGAAAT
CATCTGGCCGTCCTACAGCATGCTCGGCCTGCTGCTGCTCCGCACCGTGCTCGGCCTGTG
CTGCATCGTTGCGTCCCGTGCCTTTGCCAAATCGGTCTCGTACGCGTTCGTGTGCTTCAT
ACTGGGGCGGGACAAGAACGAACTGCGCCAGTCGGAGGATACGCTCGAGAACAAGAACAA
AATCATCGTCGAGCTGTCGTACAAGCTGTTCACGTACGGTGTGATCGGGTTCAACACCCA
GTACCTGCTGCCGAGCGTCTTTAAGCTGCTCAACATCGGCCGGCCCGATTTCTACACCGA
AATCTAAACCCCATTCCAGCCATCCAGAGCACCCACACGCACGCACCGGTGTATGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1683#0      GCCGTGATCTGCGTTAGCCGGGTGTACCTAGGCATGCACAGTGTGTTGGACATTGTCGCA 60
consensus_1683#1      ------------------------------------------------------------
                                                                                  

consensus_1683#0      GGACTGGTGCTGGTCGTACTGTTGATGATCCCCCTAATTCCGATCGTAGATCGATTGGAC 120
consensus_1683#1      ------------------------------------------------------------
                                                                                  

consensus_1683#0      CTTGTAATAGTGACTTCCCGCTGGTCGCCAATATTCGTGCTCTCGATATCGATACTACTG 180
consensus_1683#1      ------ATGGTAG--TGCAACCAGGCGCCGAGCTCGATGCCAGCGCAAACGCT--TACCG 50
                            ** **    * *  *  * **** *  *   ***   **  * ** *  *** *

consensus_1683#0      ATCGTGTTCTATCCCGATCCGGGTAAATGGACCCCAACGCGCGGCGATACCGCTCTTACG 240
consensus_1683#1      TAAGAGCGGTATCGCCGCGCGTTGGGGTCCATTTACCCGGATCGGGATAGAAC----ACG 106
                         * *   **** *    **      *  *      **    * ****   *    ***

consensus_1683#0      GTAAGCGTTTGCGCTGGCATCGAGCTCGGCGCCTGGTTGCACTACCATTTGGGCGAGTTT 300
consensus_1683#1      ATCAG---------TAGTATCGATATCGAGA-------GCACGAATATT--GGCGAGTTT 148
                       * **         * * *****  ***          **** *  ***  *********

consensus_1683#0      CAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGC 360
consensus_1683#1      CAGCAACCGGCACAGCCACCACCGTACGAAATCATCTGGCCGTCCTACAGCATGCTCGGC 208
                      ************************************************************

consensus_1683#0      CTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCC 420
consensus_1683#1      CTGCTGCTGCTCCGCACCGTGCTCGGCCTGTGCTGCATCGTTGCGTCCCGTGCCTTTGCC 268
                      ************************************************************

consensus_1683#0      AAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGC 480
consensus_1683#1      AAATCGGTCTCGTACGCGTTCGTGTGCTTCATACTGGGGCGGGACAAGAACGAACTGCGC 328
                      ************************************************************

consensus_1683#0      CAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTG 540
consensus_1683#1      CAGTCGGAGGATACGCTCGAGAACAAGAACAAAATCATCGTCGAGCTGTCGTACAAGCTG 388
                      ************************************************************

consensus_1683#0      TTCACGTACGGTGTGATCGGGTTCCACACCCAGTACCTGCTGCCGAGCG----------- 589
consensus_1683#1      TTCACGTACGGTGTGATCGGGTTCAACACCCAGTACCTGCTGCCGAGCGTCTTTAAGCTG 448
                      ************************ ************************           

consensus_1683#0      ------------------------------------------------------------
consensus_1683#1      CTCAACATCGGCCGGCCCGATTTCTACACCGAAATCTAAACCCCATTCCAGCCATCCAGA 508
                                                                                  

consensus_1683#0      ------------------------------
consensus_1683#1      GCACCCACACGCACGCACCGGTGTATGCGG 538