cluster # 1691

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Anopheles gambiae
cluster # 1691 cluster # 1691 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1691#0 length = 614 sequences # 1

consensus_1691#1 length = 261 sequences # 1

consensusID : consensus_1691#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [ACTGATCGATCATAATCGGCCTTTAGGATAGAAAGCAGAAGCGAGAAAAGCAAGCGAGTGCACCTTTACACTCGTTACCCTCAGATTCCCGTTTTCAGCCGCATCTTTTGAAGCTCATGCAATTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCAATAAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATTATGTTATATTATCTGATCTTCCGCATTCATTTAAAACAGAGCGGTGTTCCGCAACAGATCCACTCATAAACGTGTAGGTGCGCCTACGCTCGATCAACGTGGTGAACCAAACTGCTGGAGAAAGTTATAGTTAAAGAACAATTACATAATTGATTATTTATATTGTGTCCCGTCCAACTAAAGTTGCTTTTGTTTTGTTGGTTTTGTTTCTATGAAAGATGTCAGTGACTGAATCAATCTGCCCGTANGAAGAGGTACGAGGTAGCCATTTATGCGAAAAGTAGGACTTAGTTATGGGTCAAAACATATCATACAATCTATTTGCATCATATCTGCGCTAATGTTACTGATAACGATGATTGTGAAACGTTTATTGCGAAAATTATATTTAAG]

[+] EMBL BX628828             [ACTGATCGATCATAATCGGCCTTTAGGATAGAAAGCAGAAGCGAGAAAAGCAAGCGAGTGCACCTTTACACTCGTTACCCTCAGATTCCCGTTTTCAGCCGCATCTTTTGAAGCTCATGCAATTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCAATAAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATTATGTTATATTATCTGATCTTCCGCATTCATTTAAAACAGAGCGGTGTTCCGCAACAGATCCACTCATAAACGTGTAGGTGCGCCTACGCTCGATCAACGTGGTGAACCAAACTGCTGGAGAAAGTTATAGTTAAAGAACAATTACATAATTGATTATTTATATTGTGTCCCGTCCAACTAAAGTTGCTTTTGTTTTGTTGGTTTTGTTTCTATGAAAGATGTCAGTGACTGAATCAATCTGCCCGTANGAAGAGGTACGAGGTAGCCATTTATGCGAAAAGTAGGACTTAGTTATGGGTCAAAACATATCATACAATCTATTTGCATCATATCTGCGCTAATGTTACTGATAACGATGATTGTGAAACGTTTATTGCGAAAATTATATTTAAG]




>consensus_1691#0
ACTGATCGATCATAATCGGCCTTTAGGATAGAAAGCAGAAGCGAGAAAAGCAAGCGAGTG
CACCTTTACACTCGTTACCCTCAGATTCCCGTTTTCAGCCGCATCTTTTGAAGCTCATGC
AATTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCA
ATAAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATTATGTTATATTATCTGATCT
TCCGCATTCATTTAAAACAGAGCGGTGTTCCGCAACAGATCCACTCATAAACGTGTAGGT
GCGCCTACGCTCGATCAACGTGGTGAACCAAACTGCTGGAGAAAGTTATAGTTAAAGAAC
AATTACATAATTGATTATTTATATTGTGTCCCGTCCAACTAAAGTTGCTTTTGTTTTGTT
GGTTTTGTTTCTATGAAAGATGTCAGTGACTGAATCAATCTGCCCGTANGAAGAGGTACG
AGGTAGCCATTTATGCGAAAAGTAGGACTTAGTTATGGGTCAAAACATATCATACAATCT
ATTTGCATCATATCTGCGCTAATGTTACTGATAACGATGATTGTGAAACGTTTATTGCGA
AAATTATATTTAAG

consensusID : consensus_1691#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [AGATCGCCGAGGTCATTAACTCGTTCCCTCAGATCCGTTTCGGCCGCATCTTTTGAAGCTCATGCAAGTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCAATAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATGTATGTTATATTATCTGATCTTCCGCATTCATTTAAAACAGAGCGGCGTTCCGCAACAGATCCACTCATAAACGTGTAGGTGTGCTTACGCTCGATC]

[+] EMBL AL693524             [AGATCGCCGAGGTCATTAACTCGTTCCCTCAGATCCGTTTCGGCCGCATCTTTTGAAGCTCATGCAAGTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCAATAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATGTATGTTATATTATCTGATCTTCCGCATTCATTTAAAACAGAGCGGCGTTCCGCAACAGATCCACTCATAAACGTGTAGGTGTGCTTACGCTCGATC]




>consensus_1691#1
AGATCGCCGAGGTCATTAACTCGTTCCCTCAGATCCGTTTCGGCCGCATCTTTTGAAGCT
CATGCAAGTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACA
GCTCAATAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTATGTATGTTATATTATCT
GATCTTCCGCATTCATTTAAAACAGAGCGGCGTTCCGCAACAGATCCACTCATAAACGTG
TAGGTGTGCTTACGCTCGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1691#0      ACTGATCGATCATAATCGGCCTTTAGGATAGAAAGCAGAAGCGAGAAAAGCAAGCGAGTG 60
consensus_1691#1      -----------------------------------------------AGATCGCCGAG-- 11
                                                                     *      ****  

consensus_1691#0      CACCTTTACACTCGTTACCCTCAGATTCCCGTTTTCAGCCGCATCTTTTGAAGCTCATGC 120
consensus_1691#1      -GTCATTA-ACTCGTT-CCCTCAGATCCG---TTTCGGCCGCATCTTTTGAAGCTCATGC 65
                         * *** ******* ********* *    **** ***********************

consensus_1691#0      AATTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCA 180
consensus_1691#1      AAGTTGGTCTAATTCAATCGCCCCTACAGTTTCAAAATTTCCATAATTGCCTACAGCTCA 125
                      ** *********************************************************

consensus_1691#0      ATAAAAAAAAGGTATCAGTTCTCTAGCACTATGTTGTTAT-TATGTTATATTATCTGATC 239
consensus_1691#1      ATAAAAAAA-GGTATCAGTTCTCTAGCACTATGTTGTTATGTATGTTATATTATCTGATC 184
                      ********* ****************************** *******************

consensus_1691#0      TTCCGCATTCATTTAAAACAGAGCGGTGTTCCGCAACAGATCCACTCATAAACGTGTAGG 299
consensus_1691#1      TTCCGCATTCATTTAAAACAGAGCGGCGTTCCGCAACAGATCCACTCATAAACGTGTAGG 244
                      ************************** *********************************

consensus_1691#0      TGCGCCTACGCTCGATCAACGTGGTGAACCAAACTGCTGGAGAAAGTTATAGTTAAAGAA 359
consensus_1691#1      TGTGCTTACGCTCGATC------------------------------------------- 261
                      ** ** ***********                                           

consensus_1691#0      CAATTACATAATTGATTATTTATATTGTGTCCCGTCCAACTAAAGTTGCTTTTGTTTTGT 419
consensus_1691#1      ------------------------------------------------------------
                                                                                  

consensus_1691#0      TGGTTTTGTTTCTATGAAAGATGTCAGTGACTGAATCAATCTGCCCGTANGAAGAGGTAC 479
consensus_1691#1      ------------------------------------------------------------
                                                                                  

consensus_1691#0      GAGGTAGCCATTTATGCGAAAAGTAGGACTTAGTTATGGGTCAAAACATATCATACAATC 539
consensus_1691#1      ------------------------------------------------------------
                                                                                  

consensus_1691#0      TATTTGCATCATATCTGCGCTAATGTTACTGATAACGATGATTGTGAAACGTTTATTGCG 599
consensus_1691#1      ------------------------------------------------------------
                                                                                  

consensus_1691#0      AAAATTATATTTAAG 614
consensus_1691#1      ---------------