cluster # 1696

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Anopheles gambiae
cluster # 1696 cluster # 1696 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1696#0 length = 713 sequences # 1

consensus_1696#1 length = 150 sequences # 1

consensusID : consensus_1696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [GATCTGGGTGTCGAAAGTGGGAGCAAACGTTGCGCTTGGATTCATCATCCTGGCCGGCATTATCCAGCGGGATTGTACTTTTTTCTTTCCTGTGCTACCATTGATCTGGAAAAGTGTTTTGGCAAACCATTCAACCAATTTAAAGGCGCACCATCGCTCCCGTACGGATTGTCGTCCCGGCCAGACCGGGCGTTACACTACCGAAAGGGCCAATTCATCTAATCGCTTCCAGTNTTTACTAATGCTGGCCACGCTGCTGTGTTGCGGCAATGACCGTGATTGGCTTCATCATTGGGCAGGTATCGGCAAGGGCGCTGGAAGTGGGACGATAACATCGATCTGGAGTTTACTTCGGCGTTCTTTACCGGCGTGTACGGCATGTGGAACATTTACATCTTTGCGCTGATCGTGCTAGTACGCTCCCAGCCATAAGCAAGTGGGCCACAACGAAACAACGAAAACATTCATTGAGCGAGGCAAATAGAGTTCAGCCAATCTGCCGTCCGATTCGAACCGAGCGAAATTTCGTACCCTGACACAGTTCGCTCGAAAGGCGGCCAGGATTAAGACTGCTATCCCGTTGGAAGACTGGGCTGGGCTTTGCGCCGTCGAANATTTCATACTAACCGATTACGATTACGAATTGCTCCAGGCTTTGGTCAAACCCGTGCAAGTCATAACTAAACCAGNATCCTTAAACTCACGTCGTAAGC]

[+] EMBL AL693566             [GATCTGGGTGTCGAAAGTGGGAGCAAACGTTGCGCTTGGATTCATCATCCTGGCCGGCATTATCCAGCGGGATTGTACTTTTTTCTTTCCTGTGCTACCATTGATCTGGAAAAGTGTTTTGGCAAACCATTCAACCAATTTAAAGGCGCACCATCGCTCCCGTACGGATTGTCGTCCCGGCCAGACCGGGCGTTACACTACCGAAAGGGCCAATTCATCTAATCGCTTCCAGTNTTTACTAATGCTGGCCACGCTGCTGTGTTGCGGCAATGACCGTGATTGGCTTCATCATTGGGCAGGTATCGGCAAGGGCGCTGGAAGTGGGACGATAACATCGATCTGGAGTTTACTTCGGCGTTCTTTACCGGCGTGTACGGCATGTGGAACATTTACATCTTTGCGCTGATCGTGCTAGTACGCTCCCAGCCATAAGCAAGTGGGCCACAACGAAACAACGAAAACATTCATTGAGCGAGGCAAATAGAGTTCAGCCAATCTGCCGTCCGATTCGAACCGAGCGAAATTTCGTACCCTGACACAGTTCGCTCGAAAGGCGGCCAGGATTAAGACTGCTATCCCGTTGGAAGACTGGGCTGGGCTTTGCGCCGTCGAANATTTCATACTAACCGATTACGATTACGAATTGCTCCAGGCTTTGGTCAAACCCGTGCAAGTCATAACTAAACCAGNATCCTTAAACTCACGTCGTAAGC]




>consensus_1696#0
GATCTGGGTGTCGAAAGTGGGAGCAAACGTTGCGCTTGGATTCATCATCCTGGCCGGCAT
TATCCAGCGGGATTGTACTTTTTTCTTTCCTGTGCTACCATTGATCTGGAAAAGTGTTTT
GGCAAACCATTCAACCAATTTAAAGGCGCACCATCGCTCCCGTACGGATTGTCGTCCCGG
CCAGACCGGGCGTTACACTACCGAAAGGGCCAATTCATCTAATCGCTTCCAGTNTTTACT
AATGCTGGCCACGCTGCTGTGTTGCGGCAATGACCGTGATTGGCTTCATCATTGGGCAGG
TATCGGCAAGGGCGCTGGAAGTGGGACGATAACATCGATCTGGAGTTTACTTCGGCGTTC
TTTACCGGCGTGTACGGCATGTGGAACATTTACATCTTTGCGCTGATCGTGCTAGTACGC
TCCCAGCCATAAGCAAGTGGGCCACAACGAAACAACGAAAACATTCATTGAGCGAGGCAA
ATAGAGTTCAGCCAATCTGCCGTCCGATTCGAACCGAGCGAAATTTCGTACCCTGACACA
GTTCGCTCGAAAGGCGGCCAGGATTAAGACTGCTATCCCGTTGGAAGACTGGGCTGGGCT
TTGCGCCGTCGAANATTTCATACTAACCGATTACGATTACGAATTGCTCCAGGCTTTGGT
CAAACCCGTGCAAGTCATAACTAAACCAGNATCCTTAAACTCACGTCGTAAGC

consensusID : consensus_1696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [TAGTNNGAAAGTGTTTTGACATCAATATTAAGCGCACCTCGCTCCCGTCGATGTCGTCCGCAGACGGTACACTACGAAGGCATCATCTATCGCTTCCAGTTTCTAATGCTGGCCACGCTGCTGTGTGCGGCAATGACCGTGATTGGTTCA]

[+] EMBL AL697202             [TAGTNNGAAAGTGTTTTGACATCAATATTAAGCGCACCTCGCTCCCGTCGATGTCGTCCGCAGACGGTACACTACGAAGGCATCATCTATCGCTTCCAGTTTCTAATGCTGGCCACGCTGCTGTGTGCGGCAATGACCGTGATTGGTTCA]




>consensus_1696#1
TAGTNNGAAAGTGTTTTGACATCAATATTAAGCGCACCTCGCTCCCGTCGATGTCGTCCG
CAGACGGTACACTACGAAGGCATCATCTATCGCTTCCAGTTTCTAATGCTGGCCACGCTG
CTGTGTGCGGCAATGACCGTGATTGGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1696#0      GATCTGGGTGTCGAAAGTGGGAGCAAACGTTGCGCTTGGATTCATCATCCTGGCCGGCAT 60
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      TATCCAGCGGGATTGTACTTTTTTCTTTCCTGTGCTACCATTGATCTGGAAAAGTGTTTT 120
consensus_1696#1      -----------------------------------------TAGTNNG--AAAGTGTTTT 17
                                                               *  *  *  **********

consensus_1696#0      GGCAAACCATTCAACCAATTTAAAGGCGCACCATCGCTCCCGTACGGATTGTCGTCCCGG 180
consensus_1696#1      GAC----------ATCAATATTAAG-CGCACC-TCGCTCCCGT-CGA--TGTCGTCCG-- 60
                      * *          * **** * *** ****** ********** **   ********   

consensus_1696#0      CCAGACCGGGCGTTACACTACCGAAAGGGCCAATTCATCTAATCGCTTCCAGTNTTTACT 240
consensus_1696#1      ------CAGACGGTACACTAC---GAAGGCA---TCATCTA-TCGCTTCCAGTTT---CT 104
                            * * ** ********    * ***    ******* *********** *   **

consensus_1696#0      AATGCTGGCCACGCTGCTGTGTTGCGGCAATGACCGTGATTGGCTTCATCATTGGGCAGG 300
consensus_1696#1      AATGCTGGCCACGCTGCTGTGT-GCGGCAATGACCGTGATTGG-TTCA------------ 150
                      ********************** ******************** ****            

consensus_1696#0      TATCGGCAAGGGCGCTGGAAGTGGGACGATAACATCGATCTGGAGTTTACTTCGGCGTTC 360
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      TTTACCGGCGTGTACGGCATGTGGAACATTTACATCTTTGCGCTGATCGTGCTAGTACGC 420
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      TCCCAGCCATAAGCAAGTGGGCCACAACGAAACAACGAAAACATTCATTGAGCGAGGCAA 480
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      ATAGAGTTCAGCCAATCTGCCGTCCGATTCGAACCGAGCGAAATTTCGTACCCTGACACA 540
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      GTTCGCTCGAAAGGCGGCCAGGATTAAGACTGCTATCCCGTTGGAAGACTGGGCTGGGCT 600
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      TTGCGCCGTCGAANATTTCATACTAACCGATTACGATTACGAATTGCTCCAGGCTTTGGT 660
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      CAAACCCGTGCAAGTCATAACTAAACCAGNATCCTTAAACTCACGTCGTAAGC 713
consensus_1696#1      -----------------------------------------------------