cluster # 1708

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Anopheles gambiae
cluster # 1708 cluster # 1708 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1708#0 length = 392 sequences # 1

consensus_1708#1 length = 278 sequences # 1

consensusID : consensus_1708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [CACGGGTTATTTATGAACGCTAGCCGCGAACAGATAATGAAGGACTTCCCGGGCCTGTTCCATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAAGGACAAGCAAGGAGTGGGAAGCGAAGTGCGGCGAAGGCGAAGGACGATTACACGGTAAGCGATGGCAGCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGAATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGAGCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACCAAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA]

[+] EMBL AL694215             [CACGGGTTATTTATGAACGCTAGCCGCGAACAGATAATGAAGGACTTCCCGGGCCTGTTCCATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAAGGACAAGCAAGGAGTGGGAAGCGAAGTGCGGCGAAGGCGAAGGACGATTACACGGTAAGCGATGGCAGCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGAATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGAGCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACCAAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA]




>consensus_1708#0
CACGGGTTATTTATGAACGCTAGCCGCGAACAGATAATGAAGGACTTCCCGGGCCTGTTC
CATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAAGGACAAGCAAG
GAGTGGGAAGCGAAGTGCGGCGAAGGCGAAGGACGATTACACGGTAAGCGATGGCAGCGT
GGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGAATGA
AGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGAGCAA
AGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACCAAGA
AGTCAACAAGCAACGGAATCAACAGACAAGAA

consensusID : consensus_1708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 278
fasta sequence

                              [GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCATGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCCATCACCGAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAACGGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGGAAGCGATGGCCGCGTGGAAGGCGTCGGGCGGCGGTACCGATGGAGGGGACA]

[+] EMBL AL693631             [GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCATGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCCATCACCGAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAACGGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGGAAGCGATGGCCGCGTGGAAGGCGTCGGGCGGCGGTACCGATGGAGGGGACA]




>consensus_1708#1
GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCA
TGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCC
ATCACCGAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAACG
GAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGGAAGCGATGGCCGC
GTGGAAGGCGTCGGGCGGCGGTACCGATGGAGGGGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1708#0      --------------------------------------------------------CACG 4
consensus_1708#1      GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCA 60
                                                                                * 

consensus_1708#0      GGTTATTTATGAA--CGCTAGCCGCGAACAGATAA-TGAAGGACTTCCCGGGCCTGTTCC 61
consensus_1708#1      TGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCC 120
                       * * ********   *******************  **************  *   ***

consensus_1708#0      ATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAA--GGACAAGCAA 119
consensus_1708#1      ATCACCG-AGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAAC 179
                      ******* ***************************************   ******* * 

consensus_1708#0      GGAGTGGGAA-GCGAAGTGCGGCGAAGGCGAA--GGACGATTACACGGTAAGCGATGGCA 176
consensus_1708#1      GGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGG-AAGCGATGGCC 238
                      ********** *****  ***********  *  ************** ********** 

consensus_1708#0      GCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGA 236
consensus_1708#1      GCGTGGAAGGCGTCGG-GCGGCG--GTACCGATGGAGGGGACA----------------- 278
                      **************** ******   *****************                 

consensus_1708#0      ATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGA 296
consensus_1708#1      ------------------------------------------------------------
                                                                                  

consensus_1708#0      GCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACC 356
consensus_1708#1      ------------------------------------------------------------
                                                                                  

consensus_1708#0      AAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA 392
consensus_1708#1      ------------------------------------