cluster # 1710

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Anopheles gambiae
cluster # 1710 cluster # 1710 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1710#0 length = 799 sequences # 1

consensus_1710#1 length = 636 sequences # 1

consensusID : consensus_1710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCTTCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCTAATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATAGCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTTCTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACACCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACCGCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCAAGAACTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATC]

[+] EMBL BX624526             [CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCTTCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCTAATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATAGCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTTCTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACACCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACCGCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCAAGAACTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATC]




>consensus_1710#0
CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCT
TCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCT
AATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATA
GCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTT
CTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACA
CCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACC
GCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCA
AGAACTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCT
TCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATT
GCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAA
TACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAA
CTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGCAT
TCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACAAT
AATTGGCAATCTACTAATC

consensusID : consensus_1710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [AGAATCGCCCGAGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAGTGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTATATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGACTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAACTAGACGGACCAAAAAGCAATACAGC]

[+] EMBL AL693639             [AGAATCGCCCGAGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGCATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACAATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAGTGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTATATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGACTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAACTAGACGGACCAAAAAGCAATACAGC]




>consensus_1710#1
AGAATCGCCCGAGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAA
CGTGTTCGTTTCTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAA
AAATTGAACAATTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAA
CATCGATACACAATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCC
AGATTTAAGTCAACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTAT
CTTTAAAAAGCATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCA
TCGCCACTACAATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACT
TTGACCCATAGTGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGG
TCCTATCCGTATATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACA
CTTCTCAAGGACTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTC
GAAAAACAAACTAGACGGACCAAAAAGCAATACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1710#0      CTGCCTACTACAAACGCGACGTCCAACAATCAAGCCTCAGGAAAAGCATCAACTTCATCT 60
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      TCGCCATTATCATCATCATCGTCATCTGCAACGAACGCTTTGCACCGTGGGCTGCCGGCT 120
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      AATCCAAAGGCTTCCGTAACTACAGCTATTTTGCCATCTGTCGTATCGCATCCATCAATA 180
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      GCATCCTCTAGCAAGGCAGAAGCGAGCAACACACAGAACACTCTCAACACACGCACTTTT 240
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      CTAAATAATCAAAAAGATGAATCGGCTCTAACACTGCCATTACTTGAGAAGACTTCAACA 300
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      CCCGCGTCACAGTCATCACCGTCAACCAAGAGTTCCACTGAAACGAAACCAAACCACACC 360
consensus_1710#1      ------------------------------------------------------------
                                                                                  

consensus_1710#0      GCCGTCGAAGGTTCTAAAGTTGGTTCGCCTCCAGTGCCTCCACGTCGTAAGCGTGAATCA 420
consensus_1710#1      -------------------------------------------------AGAATCGCCCG 11
                                                                       **  *    * 

consensus_1710#0      AGAA--CTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTT 478
consensus_1710#1      AGGGTTNTGCAAAAATAGGTAAAATTTAATAGCCACGTCTTTCTATGAACGTGTTCGTTT 71
                      **     *****************************************************

consensus_1710#0      CTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAA 538
consensus_1710#1      CTTCATCAAATCCTAGTTCATCGAGCGGAAACACACAAGCGGTAAACAAAAATTGAACAA 131
                      ************************************************************

consensus_1710#0      TTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACAC 598
consensus_1710#1      TTGCAACTTGGGCTTCGTTACAAATAATAATCCCTTATTGGGAATAGAACATCGATACAC 191
                      ************************************************************

consensus_1710#0      AATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTC 658
consensus_1710#1      AATACAACGATTCCGTCAATAATCGGTTTCGATGCTATGATGATTATCCAGATTTAAGTC 251
                      ************************************************************

consensus_1710#0      AACTTTCCTTCTAACCCGCTTTAATAGCTTCGGNGATTGCATCTTTTATCTTTAAAAAGC 718
consensus_1710#1      AACTTTCCTTCTAACCCGCTTTAATAGCTTCGGTGATTGCATCTTTTATCTTTAAAAAGC 311
                      ********************************* **************************

consensus_1710#0      ATTCAAATTCAATTTGTTTGAAANGGATCGTTTTTTTTTTTCATTTCCATCGCCACTACA 778
consensus_1710#1      ATTCAAATTCAATTTGTTTGAAAGGGATCGTTTTTTTTTNTCATTTCCATCGCCACTACA 371
                      *********************** *************** ********************

consensus_1710#0      ATAATTGGCAATCTACTAATC--------------------------------------- 799
consensus_1710#1      ATAATTGGCAATCTACTAATCCTGACCAAACCTGAGCCTTACCGAGACTTTGACCCATAG 431
                      *********************                                       

consensus_1710#0      ------------------------------------------------------------
consensus_1710#1      TGGGATAGTCCACGTCCACGGCATCTCCTTATTGTTATTGGTGGGTCGGTCCTATCCGTA 491
                                                                                  

consensus_1710#0      ------------------------------------------------------------
consensus_1710#1      TATGGAACTAGGATGGACGTTATGTTGAGTCATACGTTTAACGACTACACTTCTCAAGGA 551
                                                                                  

consensus_1710#0      ------------------------------------------------------------
consensus_1710#1      CTGTGCCGAAATTTGGTCAATTCAGTCATTTCACAAAGTCACTCANCTCGAAAAACAAAC 611
                                                                                  

consensus_1710#0      -------------------------
consensus_1710#1      TAGACGGACCAAAAAGCAATACAGC 636