cluster # 1724

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Anopheles gambiae
cluster # 1724 cluster # 1724 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1724#0 length = 668 sequences # 1

consensus_1724#1 length = 356 sequences # 1

consensusID : consensus_1724#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGCGCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCGGCGATTTGAGTGCGTACGGTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCCCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCCCATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAGCAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGCCCCATGCTCATCCGGCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGACGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGATACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTATCCGGCTGGCA]

[+] EMBL BM650091             [CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGCGCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCGGCGATTTGAGTGCGTACGGTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCCCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCCCATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAGCAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGCCCCATGCTCATCCGGCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGACGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGATACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTATCCGGCTGGCA]




>consensus_1724#0
CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGC
GCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCG
GCGATTTGAGTGCGTACGGTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCCC
TGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGG
TTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCCC
ATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAGC
AGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCT
GCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGCCCCATGCTCATCCGGC
AACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGACG
ATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGATAC
AATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTATCC
GGCTGGCA

consensusID : consensus_1724#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCTCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCCCGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAGCAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCGGN]

[+] EMBL BX466521             [AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCTCTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCCCGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAGCAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCGGN]




>consensus_1724#1
AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCTCTGGAT
GGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACGGTTCAG
CTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCCCGTGGG
CTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAGCAGGCA
ATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCCTGCAGT
CTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCGGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1724#0      CCGCCAATTTCTATCAAACTTCCGCCATCCTGGCAAGCTTTCTGGAAACGGCTACGTTGC 60
consensus_1724#1      ------------------------------------------------------------
                                                                                  

consensus_1724#0      GCTACCGTTTGAAAGGATCGGCCACAACCGGTTCGGGCGCGTACCTTTCCGGCTTGTGCG 120
consensus_1724#1      ------------------------------------------------------------
                                                                                  

consensus_1724#0      GCGATTTGAGTGCGTACG-GTCGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCC 179
consensus_1724#1      ------AGAATCGCCACGAGGTGGAAGATGGCTGCCGCGGGGCTCGCCTTTCCCTTCCCT 54
                             ** *    *** *  ************************************* 

consensus_1724#0      CTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACG 239
consensus_1724#1      CTGGATGGCAAGCAGGATCTGATCGACTTTCTGGATCAGCTGGACGGCAAAAGTCTCACG 114
                      ************************************************************

consensus_1724#0      GTTCAGCTGTCTCCCAACGCGGTCGTGCGAAAACGTGCCGTCATCCAGTCGGTGTGTGCC 299
consensus_1724#1      GTTCAGCTGTCTCCCAACGCGGTCGTGCGCAAACGTGCCGTCATCCAGTCGGTGTGTGCC 174
                      ***************************** ******************************

consensus_1724#0      CATGGGCTGCCCCAGAACCGGCTGAAACGGCCACCGACGGCCAAATCGGCCCAACGGCAG 359
consensus_1724#1      CGTGGGCTGCCCCAGAACCGACTGAAACGGCCACCGACTGCCAAATCAGCCCAACGGCAG 234
                      * ****************** ***************** ******** ************

consensus_1724#0      CAGGCAATGCCCGCGTACCGGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCC 419
consensus_1724#1      CAGGCAATGCCCGCGTACCAGTGCAGCAACGTGAGCGAAATGCTACAGTTTTACTACTCC 294
                      ******************* ****************************************

consensus_1724#0      TGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAG-CCCCATGCTCATCCG 478
consensus_1724#1      TGCAGTCTCGAGGTTAGCATGTCGCACGTCACCTCAGTCCAAAGGCCCCATGCTCATCCG 354
                      ******************************************** ***************

consensus_1724#0      GCAACCGTTCCCGGTGGAGCTGTTTGACAAGCGCGTAGGGTTTGACGGTTTCCTTACCGA 538
consensus_1724#1      GN---------------------------------------------------------- 356
                      *                                                           

consensus_1724#0      CGATCCGCTGGCCCAAGCGGCCCTGCCGTACGTCCAGAGCAGTCCGGCGCTGGCTGCGAT 598
consensus_1724#1      ------------------------------------------------------------
                                                                                  

consensus_1724#0      ACAATCGTCATCCGATTTGGGCGACGGGTTGGAGGCGCTGCACCGGGAAGTTAGCCGTAT 658
consensus_1724#1      ------------------------------------------------------------
                                                                                  

consensus_1724#0      CCGGCTGGCA 668
consensus_1724#1      ----------