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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1445 fasta sequence
[GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCATCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGACACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTGCCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCACGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTCCGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAATTCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGNCACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACATTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCCCAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANGGCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACGCCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATTGGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGACTATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATAGNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGAAGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCGTGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCCCCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTCCCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATTTGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAGGTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAACTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGCCNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAAATAAG]
[+] EMBL AL693904 [GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCATCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGACACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTGCCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCACGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTCCGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAATTCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGNCACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACATTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCCCAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANGGCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACGCCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATTGGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGACTATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATAGNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGAAGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCGTGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCCCCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTCCCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATTTGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAGGTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAACTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGCCNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAAATAAG]
consensusID : consensus_1753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence
[AACGCTAATGCAAGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCGCATAGAGCGTGCAGAGAACGAGTCGTGGGAAGCAGTCGACCCTGTTGGGTGCGCATCGCCACGCATCGCCACTTCACCCCGCATCACTTCAAAAGTCATTCGAATTTAGGCTAGCTTTTATGACGTTTTATCCTTCTATTTTCGTTCCCGTTTCGCTACCACAGCCTGCGCGGGGTTCCTCATTGGAATGGTGCTAGGAAAGGTGCTGTCCTTTTTTTCGCTACCAAGCAGCAGTATGAAAGAATGCTGTCATCCTGTGTATTGTGTGCCGTCGCATCCGTGCAACCGTGCTGGAGAATGAGATTTTTAGTCAATTAAAAGAAAAGGAAATGACGAATACAGCACTGCCCATGGAAAACAAGATCAGCATTAGTTACTGTACCGCATGTAGCGTATATTTTCCGTTCCACTTGAATCCACTCGCAAACGGACTGAGTGCCGCTGCATTCAACGAACACAAAAAGCGTAAGAAAATCCTAACCATTTTCTAACAGCGAAACGAATCAATTAATCTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA]
[+] EMBL BX617390 [AACGCTAATGCAAGACTACATGACCTACCTTCGCAAGTACGTCGCCGAACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCGCATAGAGCGTGCAGAGAACGAGTCGTGGGAAGCAGTCGACCCTGTTGGGTGCGCATCGCCACGCATCGCCACTTCACCCCGCATCACTTCAAAAGTCATTCGAATTTAGGCTAGCTTTTATGACGTTTTATCCTTCTATTTTCGTTCCCGTTTCGCTACCACAGCCTGCGCGGGGTTCCTCATTGGAATGGTGCTAGGAAAGGTGCTGTCCTTTTTTTCGCTACCAAGCAGCAGTATGAAAGAATGCTGTCATCCTGTGTATTGTGTGCCGTCGCATCCGTGCAACCGTGCTGGAGAATGAGATTTTTAGTCAATTAAAAGAAAAGGAAATGACGAATACAGCACTGCCCATGGAAAACAAGATCAGCATTAGTTACTGTACCGCATGTAGCGTATATTTTCCGTTCCACTTGAATCCACTCGCAAACGGACTGAGTGCCGCTGCATTCAACGAACACAAAAAGCGTAAGAAAATCCTAACCATTTTCTAACAGCGAAACGAATCAATTAATCTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1753#0 GAGGTTNAATGTGTCATGTTGGGCGATGCGGGAGCTTGAAATATCAAAAGGATCACTGCA 60
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 TCTTCGAGTGGCTGCTCTGCTTGTGATCTGAAGTGGCTACATCCCCCGCTACGTGCTAGA 120
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 CACTGGCTACACAACGCTAATGCAATGACTACATGACCTACCTTCGCAAGTACGTCGCCG 180
consensus_1753#1 ------------AACGCTAATGCAA-GACTACATGACCTACCTTCGCAAGTACGTCGCCG 47
************* **********************************
consensus_1753#0 AACTGCGCAAGCAAGGAAAAGTTGCCTGTTGGCCCGAGTNCACCGGCATTAGGAGCGTTG 240
consensus_1753#1 AACTGCGCAAGCAAGGAAAAGTGCCTGGTGGCCCCGAGTCCACCG-CAT--AGAGCGT-- 102
********************** * ** * ******* ***** *** ******
consensus_1753#0 CCAGCAGAACCGAGGTCGAGCGGAAGCAGTCGAGCCTGTTACGGGTCCGNCATTCGGCCA 300
consensus_1753#1 ---GCAGAGAACGAGTCGTG-GGAAGCAGTCGACCCTGTTGGGTGCGCATC-----GCCA 153
***** **** * ************ ****** * * * * ****
consensus_1753#0 CGCAATNCGGCACACTTTCCACCCCCGGCATTTCAACCTTTCCAACGAACGGTTCATTTC 360
consensus_1753#1 CGCATCGC----CACTTCAC-CCCGCATCACTTCAAAAGT-CATTCGAA---TTTAGGCT 204
**** * ***** * *** * ** ***** * * **** ** *
consensus_1753#0 CGAAATTTCTAACGCGGCTTAAGGCTTTTCAAACTTGCACCGGTTACGCTAATACCCAAT 420
consensus_1753#1 ---AGCTTTTATGACGTTTTAT--CCTTCTATTTTCGTTCCCGTTTCGCTACCAC----- 254
* ** ** ** *** * ** * * * ** *** ***** **
consensus_1753#0 TCCTTAATNTATNCCCGGTTACCACAGGATACGACNCGGCGTACCACNCAACGCAGTNGN 480
consensus_1753#1 -----AGCCTGCGCGGGGTT-CCTCAT----TGGAATGGTG------CTAGGAAAGGTGC 298
* * * **** ** ** * ** * * ** *
consensus_1753#0 CACCCTTTGGNCCTGGCACTCGATGNTGGCATTACCCGTTCCAAATTTTGGGGNGACACA 540
consensus_1753#1 TGTCCTTTT-TTTCGCTACCAAGCAGCAGTATGAAA------GAAT-----GCTGTCATC 346
***** * ** * ** * *** * * **
consensus_1753#0 TTTTGTAGNTTTAGGCTTAAACGGCTGCGCANNCAAACGTCGGTTGGCCCTTGGGTCCCC 600
consensus_1753#1 CTGTGTA-TTGTGTGCCGTCGCATCCGTGCAACCG------TGCTGGAGAATGAGATTTT 399
* **** * * ** * * * *** * * *** ** *
consensus_1753#0 CAAATATNTATTACCNAATTANNTACTTANACATACCCGGACTTTCAACCCNCAATAANG 660
consensus_1753#1 TAG---TCAATTAAAAGAAAAGGAAATGACGAATAC---AGC-----ACTGCCCATGGAA 448
* * **** * * * * * **** * ** * **
consensus_1753#0 GCCAAAATCGCCCAANGAGNTAACTTTTGGTCAGCAACACGNGAAACAAACATTGGCACG 720
consensus_1753#1 AACAAGATCAGC--ATTAGTTACTGTACCGCATGTAGCGTAT------ATTTTCCGTTCC 500
*** *** * * ** ** * * * * * * * * *
consensus_1753#0 CCNTGGGATCNCCAATATACCCCAGTNGGCTGCGCTACACACNTCACGGGCACTAGCATT 780
consensus_1753#1 ACTTGAATCCACTCGCA-AACGGACTGAGTGCCGCTGCATTCA--ACGAACACAAAAAGC 557
* ** * * * * * * * * **** ** * *** *** * *
consensus_1753#0 GGCCCCCAGGTTACANCGCCCCACACTTTCCCCCGGANTGTGCCATACANACCCCNGGAC 840
consensus_1753#1 ---------GTAAGAAAATCCTAACCATTTTCTAACAGCG----AAACGAATCAATTAAT 604
** * * ** * * ** * * * * ** * * *
consensus_1753#0 TATGGCCCCTTGTGGGCAANCNGCACACACCTTCTGGGCCAAACGACNAAGACTTCAATA 900
consensus_1753#1 CTTTCTCCTATGTAAGGCAAAAGTCAGCATTTAGTTAGCAACA----------------- 647
* ** *** * * * ** * * ** * *
consensus_1753#0 GNTCGCACTCCNACACAANCCGGCANTCTACCCNAAGAACANGTCTACATCAAAGACAGA 960
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 AGACACACCTGCANNAAACAANAGCGGGGGNNACACAGCACNAGCTCTTGGGNAANCCCG 1020
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 TGCACTANAACACTATAAAACCACCANAGAGGGTCGCACACNCCTACTGGTGATACCCCC 1080
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 CCCCAANCCTATGGCNGGCACANACGAACCATCAACTCCCGCANCACGCGGCAAANCTTC 1140
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 CCCCAACCGGCAGCACACACNATTATCAAACCAGCGGTANTCGACTAANAAACCCGCATT 1200
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 TGGGGAGCTATACAGCGCCCCCCTGGNCCGAAANCTTTGGCGAGCTATNCNGCCACCCAG 1260
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 GTAGCGNTANAAGCATCTACGANNTTCNTGANTGTCATNCGNCCTAGTGGTAGTTAGTAA 1320
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 CTCGACCCCACACACACGTGATTATTNATGGAAAAACAATATTATTCGCGCCGCAACAGC 1380
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 CNAGTCTGCCCGCGCGAGANACCAAAAACACCAGTCAGTGNACAGCGCACTCTTGGTGAA 1440
consensus_1753#1 ------------------------------------------------------------
consensus_1753#0 ATAAG 1445
consensus_1753#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||