cluster # 1754

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Anopheles gambiae
cluster # 1754 cluster # 1754 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1754#0 length = 612 sequences # 1

consensus_1754#1 length = 575 sequences # 1

consensusID : consensus_1754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [CCGCCCACGCGTCCGGATAATTGGACGAGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAAGGTGCAAATACGATCCCACAGTGTCGGCGCGATGGGCGTCACATCTTCTCCTAGATCAATACTTCCATCCTTTAGCGACATTTACATTTACATTCAAATGTCGAGGTAGATAAACGAGGTTCTAGCAATCATCAGGAAAAACATTTTTAAGATGCAAATCCAACCCATCATCGGTGTGAACACGCTAAAGCGCCTGGCGCAATCACGGCATCGTGCAACGATCTAGCTCCATTAGAAGAAACAAGTAAAGTTTGCCAAACATACTGTTGGAAAAGGAAGAAGTAAATGAGATGAAGATATCCTGTTTAAAAAATAACAAAGAAACATACAATACCGATAACGAAACAGCGAAACATAAGGGCAAGTATAAAGCGTGATGTATAAGCACCATCATAAATAACAGTTGGGCCAATCAATTTGCGGCGGTTTTGTGTCTGGTTAGAAAGTCGGAAAAGGAAAATGTAAAGTGGGGAAAGAGTGAATCAATTCGTAAACTTTTTGACGTCCATTTTTTAAAATAATTAATTATATTAGTAGTACACAGAAG]

[+] EMBL BM598748             [CCGCCCACGCGTCCGGATAATTGGACGAGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAAGGTGCAAATACGATCCCACAGTGTCGGCGCGATGGGCGTCACATCTTCTCCTAGATCAATACTTCCATCCTTTAGCGACATTTACATTTACATTCAAATGTCGAGGTAGATAAACGAGGTTCTAGCAATCATCAGGAAAAACATTTTTAAGATGCAAATCCAACCCATCATCGGTGTGAACACGCTAAAGCGCCTGGCGCAATCACGGCATCGTGCAACGATCTAGCTCCATTAGAAGAAACAAGTAAAGTTTGCCAAACATACTGTTGGAAAAGGAAGAAGTAAATGAGATGAAGATATCCTGTTTAAAAAATAACAAAGAAACATACAATACCGATAACGAAACAGCGAAACATAAGGGCAAGTATAAAGCGTGATGTATAAGCACCATCATAAATAACAGTTGGGCCAATCAATTTGCGGCGGTTTTGTGTCTGGTTAGAAAGTCGGAAAAGGAAAATGTAAAGTGGGGAAAGAGTGAATCAATTCGTAAACTTTTTGACGTCCATTTTTTAAAATAATTAATTATATTAGTAGTACACAGAAG]




>consensus_1754#0
CCGCCCACGCGTCCGGATAATTGGACGAGAGAAGTCAATCGGACACTGTAGTCGTTATTG
TCGAAGGTGCAAATACGATCCCACAGTGTCGGCGCGATGGGCGTCACATCTTCTCCTAGA
TCAATACTTCCATCCTTTAGCGACATTTACATTTACATTCAAATGTCGAGGTAGATAAAC
GAGGTTCTAGCAATCATCAGGAAAAACATTTTTAAGATGCAAATCCAACCCATCATCGGT
GTGAACACGCTAAAGCGCCTGGCGCAATCACGGCATCGTGCAACGATCTAGCTCCATTAG
AAGAAACAAGTAAAGTTTGCCAAACATACTGTTGGAAAAGGAAGAAGTAAATGAGATGAA
GATATCCTGTTTAAAAAATAACAAAGAAACATACAATACCGATAACGAAACAGCGAAACA
TAAGGGCAAGTATAAAGCGTGATGTATAAGCACCATCATAAATAACAGTTGGGCCAATCA
ATTTGCGGCGGTTTTGTGTCTGGTTAGAAAGTCGGAAAAGGAAAATGTAAAGTGGGGAAA
GAGTGAATCAATTCGTAAACTTTTTGACGTCCATTTTTTAAAATAATTAATTATATTAGT
AGTACACAGAAG

consensusID : consensus_1754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [CCGGAAAATGATAATGATGCGAGACGCCTTTAGAATATCGACTGGCAATAGCGATCCCTTCACATGGCTATCACACAACCAGAAGACAGTAGGCTGAAAGTTTACATACTAAAAGTGTACAGAAGACAAAAAACAAGAAAAAAAGTTATATTACCTACCCACGTAACATTTGTTCAAATGGACGGTTAGATGAAAATAGAAGAAACCTCCCAACTTGTTATATGTTTCTCCGTCCTAGCCGTCAGCTACATGAGGCAGCAACAGGTAACAAACCAGCAAATTCAATCCACTAAGCACGAGGAAATCGAAATGTAAGAAACAAATGCGCCAAACAATTGTAACGTAGAACCTGATCGGATGTGTCAAAGAAGTTGCAGCAGAGAAAGAAAGAGAGAGGCAAAAAATAAGGGCAGTAGTAAAATATATACACATTTCAATTTTGCACGAGCCAATCACCCCTTAGCGCAACAGAAGAGCAATAGCCACAATAGATAATTGGACGGGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAAAGTGCAAATACGATCCCACAGTGTTGGCGCGATGG]

[+] EMBL BM585503             [CCGGAAAATGATAATGATGCGAGACGCCTTTAGAATATCGACTGGCAATAGCGATCCCTTCACATGGCTATCACACAACCAGAAGACAGTAGGCTGAAAGTTTACATACTAAAAGTGTACAGAAGACAAAAAACAAGAAAAAAAGTTATATTACCTACCCACGTAACATTTGTTCAAATGGACGGTTAGATGAAAATAGAAGAAACCTCCCAACTTGTTATATGTTTCTCCGTCCTAGCCGTCAGCTACATGAGGCAGCAACAGGTAACAAACCAGCAAATTCAATCCACTAAGCACGAGGAAATCGAAATGTAAGAAACAAATGCGCCAAACAATTGTAACGTAGAACCTGATCGGATGTGTCAAAGAAGTTGCAGCAGAGAAAGAAAGAGAGAGGCAAAAAATAAGGGCAGTAGTAAAATATATACACATTTCAATTTTGCACGAGCCAATCACCCCTTAGCGCAACAGAAGAGCAATAGCCACAATAGATAATTGGACGGGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAAAGTGCAAATACGATCCCACAGTGTTGGCGCGATGG]




>consensus_1754#1
CCGGAAAATGATAATGATGCGAGACGCCTTTAGAATATCGACTGGCAATAGCGATCCCTT
CACATGGCTATCACACAACCAGAAGACAGTAGGCTGAAAGTTTACATACTAAAAGTGTAC
AGAAGACAAAAAACAAGAAAAAAAGTTATATTACCTACCCACGTAACATTTGTTCAAATG
GACGGTTAGATGAAAATAGAAGAAACCTCCCAACTTGTTATATGTTTCTCCGTCCTAGCC
GTCAGCTACATGAGGCAGCAACAGGTAACAAACCAGCAAATTCAATCCACTAAGCACGAG
GAAATCGAAATGTAAGAAACAAATGCGCCAAACAATTGTAACGTAGAACCTGATCGGATG
TGTCAAAGAAGTTGCAGCAGAGAAAGAAAGAGAGAGGCAAAAAATAAGGGCAGTAGTAAA
ATATATACACATTTCAATTTTGCACGAGCCAATCACCCCTTAGCGCAACAGAAGAGCAAT
AGCCACAATAGATAATTGGACGGGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAA
AGTGCAAATACGATCCCACAGTGTTGGCGCGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1754#0      CCGCCCACGCGTCCGGATAATTGGACGAGAGAAGTCAATCGGACACTGTAGTCGTTATTG 60
consensus_1754#1      ------CCGGAAAATGATAAT--GATGCGAGACGCCTTTAGAATATCG-ACTGGCAATAG 51
                             **      ******  ** * **** * *  * * * *  * * * *  ** *

consensus_1754#0      TCGAAGGTGCAAATA-CGATCCCACAGTGTCGGCGCGATGGGCGTCACATCTTC-TCCTA 118
consensus_1754#1      CGATCCCTTCACATGGCTATCACACAACCAGAAGACAGTAGGCTGAAAGTTTACATACTA 111
                             * ** **  * *** ****         *  * ***   *  * * * * ***

consensus_1754#0      GATCAATACTTCCATCCTTTAGCGACATTTACATTTACATTCAAATGTCGAGGTAGATAA 178
consensus_1754#1      AAAGTGTACAGAAGACAAAAAACAAGAAAAAAAGTTATATT-----ACCTACCCACGTAA 166
                       *    ***      *    * * * *   * * *** ***       * *   *  ***

consensus_1754#0      ACGAGGTTCTAGCAATCATCAGGAAAAACATTTTTAAGATGCAAATCCAACCCATCATCG 238
consensus_1754#1      CATTTGTTCAAATGGACGGTTAGATGAAAATAGAAGAAACCT---CCCAACTTGTTATAT 223
                           **** *     *     **  ** **     * *       *****   * **  

consensus_1754#0      GTGTGAACACGCTAAAGCGCCTGGCGCA-ATCACGGCATCGTGCAACGATCTAGC---TC 294
consensus_1754#1      GTTTCTCCGTCCTAGC-CGTCAGCTACATGAGGCAGCAACAGGTAACAAACCAGCAAATT 282
                      ** *   *   ***   ** * *   **     * *** *  * *** * * ***   * 

consensus_1754#0      CATTAGAAGAAACAAGTAAAGTTTGCCAAACATACTGTTGGAAAAGGAAGAAGTAAATGA 354
consensus_1754#1      CAATCCACTAAGCACGAGGAAATCG--AAATGTAA-GAAACAAATGCGCCAAACAATTGT 339
                      ** *  *  ** ** *   *  * *  ***  **  *    *** *    **  ** ** 

consensus_1754#0      GATGAAGATATCCTGTTTAAAAAATAACAAAGAAACATACAATACCGATAACGAAACAGC 414
consensus_1754#1      AACGTAGAA--CCTGATCGGATG-TGTCAAAGAAGT-TGCAGCA--GAGAAAGAAAGAGA 393
                       * * ***   **** *   *   *  *******   * **  *  ** ** **** ** 

consensus_1754#0      GAAACATAAGGGCAAGTATAAAGCGTGATGTATAAGCACCATCATAAATAACAGTTGGGC 474
consensus_1754#1      GAGGCAAAAAATAAGGGCAGTAGTAAAATATATACACATT----TCAATTTTGCACGAGC 449
                      **  ** **    * *     **    ** ****  **      * ***       * **

consensus_1754#0      CAATCAATTTGCGGCGGTTTTGTGTCTGGTTAGAAAGTCGGAAAAGGAAAATGTAAAGTG 534
consensus_1754#1      CAATCACCCCTTAGCGCAACAGA----AGAGCAATAGCCACAATAGATAATTGGAC---- 501
                      ******       ***     *      *    * ** *  ** **  ** ** *     

consensus_1754#0      GGGAAAGAGTGAATCAATTCGTAAACTTTTTGACGTCCATTTTTTAAA-ATAATTAATTA 593
consensus_1754#1      -GGGAGAAGTCAATCGGACACTGTAGTCGTTATTGTCGAAAGTGCAAATACGATC--CCA 558
                       ** *  *** ****      *  * *  **   *** *   *  *** *  **     *

consensus_1754#0      TATTAGTAGTACACAGAAG 612
consensus_1754#1      CAGTGTTGGCGCGATGG-- 575
                       * *  * *  *   *