cluster # 1756

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Anopheles gambiae
cluster # 1756 cluster # 1756 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1756#0 length = 614 sequences # 1

consensus_1756#1 length = 380 sequences # 1

consensusID : consensus_1756#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence

                              [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC]

[+] EMBL BM592477             [CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTATTAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTGCAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTTCATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAACACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATCCAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGTAATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGGTCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACCAGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAAACTTTTTGATGTCC]




>consensus_1756#0
CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATT
TAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTAT
TAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTG
CAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTT
CATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAAC
ACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATC
CAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGT
AATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGG
TCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACC
AGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAA
ACTTTTTGATGTCC

consensusID : consensus_1756#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA]

[+] EMBL BX467160             [GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCAATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTCATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAGTATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGAAAGTATAAGAAACAAAATTA]




>consensus_1756#1
GGCAAGAATCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCA
ATCATTTGGAGAAATGCTTGACGACCGTGCTATGCTTTATAATCCAGATGAACCTATTTC
ATTTACTCGATCCCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTTCCAN
TTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAAAAGGTCAAAATAACAGATGAAG
CCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAATATTTTAG
TATCGCGAATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATTTAGCTTCGA
AAGTATAAGAAACAAAATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1756#0      CCGCCCACGCGTCCGCGAATTTCATGCCTTTTGGAATAGTCGGAACGAATCTGTTGAATT 60
consensus_1756#1      ----------------------------------------------------GGCAAGAA 8
                                                                          *   *   

consensus_1756#0      TAGCTTCGAAAGTATAAGAAACAAAATTAAAGAGATAGCTAAATGGGGCGCATGTCGTAT 120
consensus_1756#1      TCGGCACGNTNNGACGGAAGACAAAGCTCGTTCCTCNCCGGAGTGTTCTGCA-ATCAT-T 66
                      * *   **     *    * *****  *          *  * **    ***  ** * *

consensus_1756#0      TAAAGGAACGATGGAGGGAAAATTATGTTGGACAGTAGAAAATAGCGTTTTGGAACAGTG 180
consensus_1756#1      TGGAGAAATGCTTGACG----ACCGTGCTATGCTTTATAATCCAGA----TGAACCTATT 118
                      *  ** ** * * ** *    *   ** *   *  ** **   **     ** * *  * 

consensus_1756#0      CAAACTGATGGATTTGCCATTACCGAACGATTGGAAGTATCAGTTACAAAAAGAAAGTTT 240
consensus_1756#1      TCATTTACTCGATC--CCACTCAAGGGCAAACGGTAGTTGCAATGATCAAGATTTAACTT 176
                        *  *  * ***   *** *   *  * *  ** ***  ** * *  ** *   *  **

consensus_1756#0      CATAAAAATGGACAAGAAACCCGACGCGAAGCAAGAGTCTAAATTAGAAACACAAAAAAC 300
consensus_1756#1      C-CANTTTCTCCTAGTAAAGATATCGAAAAATCAGTAATAAAA---AAGGTCAAAATAAC 232
                      *  *         *  ***     **  **   **     ***    *     *** ***

consensus_1756#0      ACCTCCAATTGATACGAACAATGCACGAAAAGATGCAAATGAGGTGACCGTCAGTACATC 360
consensus_1756#1      AGATGAAGCCGTCTGCGACTTAGCGCGATATGGTTCATAGGAAATGTGAATAATCGTAAA 292
                      *  *  *   *      **   ** *** * * * ** * **  **    * *    *  

consensus_1756#0      CAAAACGAAATTAAACGAAACCACGTCTATGGCAGGTAGTATCGTGAAATTTGCAAAAGT 420
consensus_1756#1      TATTTTAGTATCGCG-AATTTCATGCCTATTTGGAATAGTCGGAACGAATCTGTTGAATT 351
                       *       **      *   ** * ****      ****       *** **   ** *

consensus_1756#0      AATGTTTAAAGAAGATGAGAATGAGACGTTGGTCTTGGACAGTTCTACATTAAAAAAAGG 480
consensus_1756#1      TA-GCTTCGAAAGTATAAGAAACAAA-ATTA----------------------------- 380
                       * * **  * *  ** ****  * *  **                              

consensus_1756#0      TCTATCATCATCTCTTCTCAAAAACCTGGATAGCAAAAAAGAAAAAAATGCAACAAAACC 540
consensus_1756#1      ------------------------------------------------------------
                                                                                  

consensus_1756#0      AGCTACAAAGTGCTCTAGCACTGAGACATTCACAGATCAAAATTCAAAAAAACGTGTTAA 600
consensus_1756#1      ------------------------------------------------------------
                                                                                  

consensus_1756#0      ACTTTTTGATGTCC 614
consensus_1756#1      --------------