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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGCTAGTCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACGGCAGAAGCTGCTGGCTATTCGGGCTAAATTTGGTGGCCCAGAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTTCAAAGACAAAAGTATTCCAGATATATTTGACCTCGTTGTTGGACTTCACAAACGCTACGGCCAGGATGTGGCCATTATTGGTGCTTTTAACGATTTGGTGCTAGATCTGTCCAGCTCCAAGAATGTGGAAAAGATACTGCTTGCGAAAACCACGAAGAAATCGTTCGTGTACGATTATCTTGAGCCATGGTTGGGCACAGGGCTGCTGATCTCGTTCGGCGAGAAGTGGTTCCAGCGGCGCAAGATAATAACGCCAGCGTTTCACTTCAAGATATTGGACCAGTTTATTGACGTGTTCAATGAGGAAGCGGATGTATTGATCTCCAAGCTGGAGAAGCATGTTGGAAAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCAACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGCCGTCAAG]
[+] EMBL BM653990 [CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGCTAGTCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACGGCAGAAGCTGCTGGCTATTCGGGCTAAATTTGGTGGCCCAGAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTTCAAAGACAAAAGTATTCCAGATATATTTGACCTCGTTGTTGGACTTCACAAACGCTACGGCCAGGATGTGGCCATTATTGGTGCTTTTAACGATTTGGTGCTAGATCTGTCCAGCTCCAAGAATGTGGAAAAGATACTGCTTGCGAAAACCACGAAGAAATCGTTCGTGTACGATTATCTTGAGCCATGGTTGGGCACAGGGCTGCTGATCTCGTTCGGCGAGAAGTGGTTCCAGCGGCGCAAGATAATAACGCCAGCGTTTCACTTCAAGATATTGGACCAGTTTATTGACGTGTTCAATGAGGAAGCGGATGTATTGATCTCCAAGCTGGAGAAGCATGTTGGAAAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCAACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGCCGTCAAG]
consensusID : consensus_1767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCAGCTAGAGAATGTTTTGGCGTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACGGAGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGTTGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAATGGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAACCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACANNNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCGGCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTGACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG]
[+] EMBL AL693970 [AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCAGCTAGAGAATGTTTTGGCGTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACGGAGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCTTGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGTTGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAATGGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAACCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACANNNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCGGCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTGACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1767#0 -----------CCGGAAAGTGTTACGCGCAGCTGTTTTGCAAGCTAGAGAATGTTTTGGC 49
consensus_1767#1 AATCGCCCNAGGTTAAAAGTGTTACGCGCAGCTATTTTGCA-GCTAGAGAATGTTTTGGC 59
****************** ******* ******************
consensus_1767#0 -TAG-TCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAGGTACCATCAACAACG 107
consensus_1767#1 GTAGATCACGCTGCTGGCCGTGTACGTGGCTTATCTGCTGCTTAAGTACCATCAGCAACG 119
*** *************************************** ********* *****
consensus_1767#0 GCAGAAGCTGCTGGCTATTCGGGCTAAA-TTTGGTGGCCCAGA--GTCGAGCTACTTTCT 164
consensus_1767#1 G-AGAAGCTGCTGGCTATTCGGGCTAAACTTTGGTGGCCCACNCAGTCGAGCTACTTTCT 178
* ************************** ************ ***************
consensus_1767#0 TGGGACGTTTTATTTGTT--CAAAGACA-AAAGTATTCCAGATATATTTGACCTCGTTGT 221
consensus_1767#1 TGGGACGTTTTATTTGTCTCCAAAGACACAAAGTATTCCAGATATATTTGACCTCGTTGT 238
***************** ******** *******************************
consensus_1767#0 TGGACTTCACAAACGCTACGGCCA-GGATGTGGCCATTATTGGTGCTTTTAACGATT--T 278
consensus_1767#1 TGGGCTTCACAAACGCTACGGTCACGGATGTGGCCATTATTGGTGCTTTCAACGCATAAT 298
*** ***************** ** ************************ **** * *
consensus_1767#0 GGTGCTAGAT-CTGTCCAGCTCCAAGAA-TGTGGAAAA-GATAC-TGCTTGCG----AAA 330
consensus_1767#1 GGTGCTAGATACTGTCCAGCTCCAAGAAATGTGGAANAAGATACATAGCTATGCCGAAAA 358
********** ***************** ******* * ***** * * * ***
consensus_1767#0 ACCACGAA-GAAAT-CGTTCGTGTA-CGATTAT--CTTGAGCC--ATGGT-TGGGCACAG 382
consensus_1767#1 CCCACGNAAGAAATACGACAGCGTAACGATCAATACTTGAGNCCANAGGTATGGGCACAN 418
***** * ***** ** * *** **** * ****** * *** ********
consensus_1767#0 GG----CTGCTGATCTCGTTCG-----GCGAGAAG------TGGTTCC--------AGCG 419
consensus_1767#1 NNGAGGCTGTGATACTCGCGTGTCGGGGCGNNAGNCGAACATGGTTTCCCAAGCCGGGCG 478
*** **** * *** * ***** * ***
consensus_1767#0 GCGCAAGATAA-TAACGCCAGCGTTT--CACTTCAAG-ATATTGGACCAG---TTTATTG 472
consensus_1767#1 GCACAGGATAACTAACGCCAGCGGTTATCACTTCAAGCATATTGGACCAGGATTTTATTG 538
** ** ***** *********** ** ********* ************ *******
consensus_1767#0 ACGTG-TTCAA-TGAGGAAGCGG-ATG-TATTGATCTCCAAGCTGGAGAAGCATGTTGGA 528
consensus_1767#1 ACGTGGTTCAACTGAGGAAGCGGCATGGTATTGAG------------------------- 573
***** ***** *********** *** ******
consensus_1767#0 AAGGGAGAGTTTGATATCTACGACTATGTGACGCTGTACGCGTTGGATAGTATCTGTGCA 588
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 ACTTCAATGGGTGTTCGCATCCATGCACAGGACGATCCACAACAACGAGTACGCACAAGC 648
consensus_1767#1 ------------------------------------------------------------
consensus_1767#0 CGTCAAG 655
consensus_1767#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||