cluster # 1770

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Anopheles gambiae
cluster # 1770 cluster # 1770 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1770#0 length = 562 sequences # 1

consensus_1770#1 length = 168 sequences # 1

consensusID : consensus_1770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAGAAGAAGAAGAAGAAAACTCACTTCCACACCTTAACGAAACGATTTGCGGGAGGGAAGTGGAGAGAGCGAAAGATAGAGAGAGAGATATATATAACCATCTCCCCATCCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTACTAGCACCTATCTAATACCAGAGCTAAACACTACCACACACACAGACACACACGCAGAGGTAGGACTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTGACTTATAGTGATATGTATAGACAAGGGCCCGGCAGAACTCGGAGGAAATGGTCCACACTTTTAATTAAATCGCTTACTGCTCGGCGACGCTCGTGGGTGTCCTTCCCGGTACCGGATACAATCGTGTGTGTGTGTGTGCTGGTGTGAAAGTGTACAGGATCATGGTTGCTGTCACACAACCATACCTGTACCAAGAAGGAAAACGACCCCCCCCCTCCCCTTCAGGGACACAG]

[+] EMBL BM605375             [CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAGAAGAAGGAGAAGAAAAGAAAAAGAAGAAGAAGAAGAAAACTCACTTCCACACCTTAACGAAACGATTTGCGGGAGGGAAGTGGAGAGAGCGAAAGATAGAGAGAGAGATATATATAACCATCTCCCCATCCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTACTAGCACCTATCTAATACCAGAGCTAAACACTACCACACACACAGACACACACGCAGAGGTAGGACTTAGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTGACTTATAGTGATATGTATAGACAAGGGCCCGGCAGAACTCGGAGGAAATGGTCCACACTTTTAATTAAATCGCTTACTGCTCGGCGACGCTCGTGGGTGTCCTTCCCGGTACCGGATACAATCGTGTGTGTGTGTGTGCTGGTGTGAAAGTGTACAGGATCATGGTTGCTGTCACACAACCATACCTGTACCAAGAAGGAAAACGACCCCCCCCCTCCCCTTCAGGGACACAG]




>consensus_1770#0
CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAG
AAGAAGGAGAAGAAAAGAAAAAGAAGAAGAAGAAGAAAACTCACTTCCACACCTTAACGA
AACGATTTGCGGGAGGGAAGTGGAGAGAGCGAAAGATAGAGAGAGAGATATATATAACCA
TCTCCCCATCCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTACTAGCACCTATCTAAT
ACCAGAGCTAAACACTACCACACACACAGACACACACGCAGAGGTAGGACTTAGTAGTAC
TAGTAGTAGTAGTAGTAGTAGTAGTAGTGACTTATAGTGATATGTATAGACAAGGGCCCG
GCAGAACTCGGAGGAAATGGTCCACACTTTTAATTAAATCGCTTACTGCTCGGCGACGCT
CGTGGGTGTCCTTCCCGGTACCGGATACAATCGTGTGTGTGTGTGTGCTGGTGTGAAAGT
GTACAGGATCATGGTTGCTGTCACACAACCATACCTGTACCAAGAAGGAAAACGACCCCC
CCCCTCCCCTTCAGGGACACAG

consensusID : consensus_1770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [AGAAATCGTCACGAGGTTGAAGAGTGGAAGTGGAGAGAGCGACCNGATAAGAGAGAGNATACTATATAACCATCTCCCCATNCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTNCTTAGGCACCTATTTTATAACNGGAAGCTAAACAACTANCACAAACACAGGA]

[+] EMBL BX469254             [AGAAATCGTCACGAGGTTGAAGAGTGGAAGTGGAGAGAGCGACCNGATAAGAGAGAGNATACTATATAACCATCTCCCCATNCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTNCTTAGGCACCTATTTTATAACNGGAAGCTAAACAACTANCACAAACACAGGA]




>consensus_1770#1
AGAAATCGTCACGAGGTTGAAGAGTGGAAGTGGAGAGAGCGACCNGATAAGAGAGAGNAT
ACTATATAACCATCTCCCCATNCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTNCTTA
GGCACCTATTTTATAACNGGAAGCTAAACAACTANCACAAACACAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1770#0      CCGCCCACGCGTCCGCCCACGCGTCCGGAAGAAGAAGAAGATGAAAGGAAAAGGAAGAAG 60
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      AAGAAGGAGAAGAAAAGAAAAAGAAGAAGAAGAAGAAAACTCACTTCCACACCTTAACGA 120
consensus_1770#1      ----------------------------------------------AGAAATCGTCACGA 14
                                                                      * * * * ****

consensus_1770#0      AACGATTTGCGGGAGGGAAGTGGAGAGAGCGAA-AGATA-GAGAGAGAGATATATATAAC 178
consensus_1770#1      GG----TTGAAGAGTGGAAGTGGAGAGAGCGACCNGATAAGAGAGAGNATACTATATAAC 70
                            ***  *   *****************   **** *******     ********

consensus_1770#0      CATCTCCCCATCCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTACT--AGCACCTATC 236
consensus_1770#1      CATCTCCCCATNCCGTTGTAGACTATCAAAAGGATAGCGAGAAGTNCTTAGGCACCTATT 130
                      *********** ********************************* **   ******** 

consensus_1770#0      TAATACCAG--AGCTAAACA-CTACCACACACACAGACACACACGCAGAGGTAGGACTTA 293
consensus_1770#1      TTATAACNGGAAGCTAAACAACTANCACAAACACAGGA---------------------- 168
                      * *** * *  ********* *** **** ******                        

consensus_1770#0      GTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGTGACTTATAGTGATATGTATAGACAA 353
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      GGGCCCGGCAGAACTCGGAGGAAATGGTCCACACTTTTAATTAAATCGCTTACTGCTCGG 413
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      CGACGCTCGTGGGTGTCCTTCCCGGTACCGGATACAATCGTGTGTGTGTGTGTGCTGGTG 473
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      TGAAAGTGTACAGGATCATGGTTGCTGTCACACAACCATACCTGTACCAAGAAGGAAAAC 533
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      GACCCCCCCCCTCCCCTTCAGGGACACAG 562
consensus_1770#1      -----------------------------