cluster # 1774

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1774 cluster # 1774 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1774#0 length = 634 sequences # 1

consensus_1774#1 length = 448 sequences # 1

consensusID : consensus_1774#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [AGGCGATCAGGTGAAAAAAGCGCACGGATTGAAGGATGAATTTTACGAGGATATGTTCAGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACAGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATATATCACATGTCCGGCACGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGTTATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCATGATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACGGCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC]

[+] EMBL BX620420             [AGGCGATCAGGTGAAAAAAGCGCACGGATTGAAGGATGAATTTTACGAGGATATGTTCAGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACAGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATATATCACATGTCCGGCACGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGTTATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCATGATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACGGCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC]




>consensus_1774#0
AGGCGATCAGGTGAAAAAAGCGCACGGATTGAAGGATGAATTTTACGAGGATATGTTCAG
CTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCG
GGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAACTA
TCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGCGATAGCATT
CGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACAGGTGCCGAA
CTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACAC
GATGACTATATATCACATGTCCGGCACGGCAAAGATGGGTCCCCCAGATGATCCTTGGGC
AGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGTTATAGATGCTAG
CATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCATGATTGGAGAGAA
GGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACGGCGANGGAAGCG
TCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC

consensusID : consensus_1774#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGATATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAATATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACCAGGTGCCGAACTGTCGCACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTAC]

[+] EMBL AL694022             [AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGATATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAATATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACCAGGTGCCGAACTGTCGCACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTAC]




>consensus_1774#1
AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGAT
ATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCC
CAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTA
CCACAATATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAGGCTGCGA
TAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACCAG
GTGCCGAACTGTCGCACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACA
GTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGATGAT
CCTTGGGCAGTTGTCGATCCGAAGCTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1774#0      ----AGGCGATCAGGTGAAAAAAGCGCACGGATTGAA--GGATGAA--TTTTACGAGGAT 52
consensus_1774#1      AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGAT 60
                            *  **   * *     **       **** *  ***** *  ************

consensus_1774#0      ATGTTCAG-CTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCC 111
consensus_1774#1      ATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCC 120
                      ******** ***************************************************

consensus_1774#0      CAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTA 171
consensus_1774#1      CAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTA 180
                      ************************************************************

consensus_1774#0      CCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGC 231
consensus_1774#1      CCACAA-TATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAA-GGCTGC 238
                      ****** ********************************************** ******

consensus_1774#0      GATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAAC- 290
consensus_1774#1      GATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACC 298
                      *********************************************************** 

consensus_1774#0      AGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTC 350
consensus_1774#1      AGGTGCCGAACTGTCGC--ACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTC 356
                      *****************   ****************************************

consensus_1774#0      GACAGTACACGATGACTATATATCACAT-GTCCGGCACGG-CAAAGATGGGTCCCCCAGA 408
consensus_1774#1      GACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGA 416
                      ******************* ******** *********** *******************

consensus_1774#0      TGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGT 468
consensus_1774#1      TGATCCTTGGGCAGTTGTCGATCCGAAGCTAC---------------------------- 448
                      ********************************                            

consensus_1774#0      TATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCAT 528
consensus_1774#1      ------------------------------------------------------------
                                                                                  

consensus_1774#0      GATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACG 588
consensus_1774#1      ------------------------------------------------------------
                                                                                  

consensus_1774#0      GCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC 634
consensus_1774#1      ----------------------------------------------