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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence
[CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG]
[+] EMBL AL694058 [CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG]
consensusID : consensus_1779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT]
[+] EMBL BX625379 [GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1779#0 CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTAT 60
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 TGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGC 120
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 TGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAA 180
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 ACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGG 240
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 GGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCA 300
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 CACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACT 360
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 GCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCG 420
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 GACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCT 480
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 CGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAA 540
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 CCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGAT 600
consensus_1779#1 ------------------------------------------------------------
consensus_1779#0 TACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATT 660
consensus_1779#1 --------------GAACAT-CCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCC----- 40
**** * * *** ** **** * ** * ***
consensus_1779#0 GGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCC 720
consensus_1779#1 -AACACCCTG-ATAGCTGTATATAAGATATCGTGTCTCTACGTGTACG------TCCTTC 92
** * ** * * * * * * * * *** * * *
consensus_1779#0 ATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGA 780
consensus_1779#1 CTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCG---GC 149
*** ** * *** **** * * * * * ** * **** * * * *
consensus_1779#0 AANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTA 840
consensus_1779#1 AATGCGC-----CGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGG-- 202
** ** * * * *** ** ** * *** * * * *
consensus_1779#0 GCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCG 900
consensus_1779#1 ACTAAATGTGCCGAATAACGACTGCT---------ATTCGCATCCACCCCAC---TCCCG 250
* *** ** ** *** ** * * *** *** ** ****
consensus_1779#0 TCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTAC-TATCCCTTAGT 959
consensus_1779#1 CCTCCCTCC------------CCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAA 298
* ***** * * ** * * * * * * *** ***
consensus_1779#0 GGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCC 1019
consensus_1779#1 AAAAAGGTGAACCGGCGCTATA---TGTACGTATGACATCAGCAACAG----GGCACATC 351
* * *** * * * *** ****** ** ** * * *
consensus_1779#0 GCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTG 1079
consensus_1779#1 AGTTAGCAAGGGAAGGGAAGAACGAAGCTTT-----ATTGAAGGTGA--AGCGAATTC-- 402
* ** * * * *** * * * * * * * ** *
consensus_1779#0 CGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGG 1139
consensus_1779#1 --------------GAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTA-GA 447
* *** ** ** * * *** * *** * * * *
consensus_1779#0 GCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGC 1199
consensus_1779#1 ATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGA---TAAACACACACACAC 504
* **** * * ** * * * * * ** * * * *
consensus_1779#0 GCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAAC 1259
consensus_1779#1 ACCCACACATACACATAT-ACATACGCGCATCTGCGAAGAAAG-GCGTGGGGTTTACAAT 562
*** * * * **** * * *** * * * * *** ****
consensus_1779#0 GCC-CCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCT 1318
consensus_1779#1 AATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGAT 622
* * * ** * * * **** ** * * *
consensus_1779#0 NTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGA 1378
consensus_1779#1 A-ATGAAGCTGCTGCTGCTGGTA-ATGCAGATGATGGTAGCCGATGGCGGCAAC-GTGCA 679
** * *** * * * * * * * * ** * * * ** * * * *
consensus_1779#0 GCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACA 1438
consensus_1779#1 GTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGG 739
* * * * * * * ** * * * * * *
consensus_1779#0 CCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG 1482
consensus_1779#1 TCATTGNCTAAT-------------------------------- 751
* * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||