cluster # 1784

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Anopheles gambiae
cluster # 1784 cluster # 1784 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1784#0 length = 1080 sequences # 1

consensus_1784#1 length = 541 sequences # 1

consensusID : consensus_1784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1080
fasta sequence

                              [AGGCTTACAGGAGTATCTGGTGCAGCGTATCAGACCTTGCCAAGGGTAGCTGTTTGGCCGACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTACCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGCTGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGACGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGTACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAAATTCACAGCTGTGCCTATGATCGAAATAATCTGTTCTACGTCATCATTCAATTTTCTAATGTATATGAAAACCCACCACGAATGCTCACTGGACGGGCATTAATCTCGGCAGAAGTGGCATCAACCATACTGTGCTGCATCGAAGACTAGAAGCGTGGCAGCGGACGCGCCATTTTATGAGTGTCGCCGAAATCGAAATTCATGAACAGGTGTTCAAATCCGGCATCGTCATGGAAACGGGCGATTGGCGTACACGAAAAGGTATTGCTCATACACGGCACGAAATCTGGACACACGGTACATGATTAGNCTCGTGGCTGTATCATGATGCTCTGGTTAAGTCCAATAACAACNACACAGAAATAAAATTTCACATTTGGCTCCGGATTNCAACCTAGGTATTTCCAAATAGTCCGNCCATAATTNACCCGCANTACTTAATCAACNGGNNCNNGCANCGAACGCAAACTAGGACCGGGAGGAGGANACANACATTGANCCCACCANCGGCACTCAACACGCGCAANAAACGGCACGTCNCACGGGCGGAACAACCCAAACGGGGTGGAAACACCAACAAACCGGGGCCCTACANNCGGTGGAGCAACTACACAAACATGTCCCCGAGANCAAAACACCAGAGATCCGGCGACCCCCGGCGGCACCNGAACAAACCAAAACGCACCANCNACGCCAAACANTGGCCACACAAAAACAACAANNAGAACGAAAC]

[+] EMBL AL694105             [AGGCTTACAGGAGTATCTGGTGCAGCGTATCAGACCTTGCCAAGGGTAGCTGTTTGGCCGACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTACCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGCTGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGACGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGTACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAAATTCACAGCTGTGCCTATGATCGAAATAATCTGTTCTACGTCATCATTCAATTTTCTAATGTATATGAAAACCCACCACGAATGCTCACTGGACGGGCATTAATCTCGGCAGAAGTGGCATCAACCATACTGTGCTGCATCGAAGACTAGAAGCGTGGCAGCGGACGCGCCATTTTATGAGTGTCGCCGAAATCGAAATTCATGAACAGGTGTTCAAATCCGGCATCGTCATGGAAACGGGCGATTGGCGTACACGAAAAGGTATTGCTCATACACGGCACGAAATCTGGACACACGGTACATGATTAGNCTCGTGGCTGTATCATGATGCTCTGGTTAAGTCCAATAACAACNACACAGAAATAAAATTTCACATTTGGCTCCGGATTNCAACCTAGGTATTTCCAAATAGTCCGNCCATAATTNACCCGCANTACTTAATCAACNGGNNCNNGCANCGAACGCAAACTAGGACCGGGAGGAGGANACANACATTGANCCCACCANCGGCACTCAACACGCGCAANAAACGGCACGTCNCACGGGCGGAACAACCCAAACGGGGTGGAAACACCAACAAACCGGGGCCCTACANNCGGTGGAGCAACTACACAAACATGTCCCCGAGANCAAAACACCAGAGATCCGGCGACCCCCGGCGGCACCNGAACAAACCAAAACGCACCANCNACGCCAAACANTGGCCACACAAAAACAACAANNAGAACGAAAC]




>consensus_1784#0
AGGCTTACAGGAGTATCTGGTGCAGCGTATCAGACCTTGCCAAGGGTAGCTGTTTGGCCG
ACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTA
CCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGC
TGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGA
CGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGT
ACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAAATTCACAGCTGTG
CCTATGATCGAAATAATCTGTTCTACGTCATCATTCAATTTTCTAATGTATATGAAAACC
CACCACGAATGCTCACTGGACGGGCATTAATCTCGGCAGAAGTGGCATCAACCATACTGT
GCTGCATCGAAGACTAGAAGCGTGGCAGCGGACGCGCCATTTTATGAGTGTCGCCGAAAT
CGAAATTCATGAACAGGTGTTCAAATCCGGCATCGTCATGGAAACGGGCGATTGGCGTAC
ACGAAAAGGTATTGCTCATACACGGCACGAAATCTGGACACACGGTACATGATTAGNCTC
GTGGCTGTATCATGATGCTCTGGTTAAGTCCAATAACAACNACACAGAAATAAAATTTCA
CATTTGGCTCCGGATTNCAACCTAGGTATTTCCAAATAGTCCGNCCATAATTNACCCGCA
NTACTTAATCAACNGGNNCNNGCANCGAACGCAAACTAGGACCGGGAGGAGGANACANAC
ATTGANCCCACCANCGGCACTCAACACGCGCAANAAACGGCACGTCNCACGGGCGGAACA
ACCCAAACGGGGTGGAAACACCAACAAACCGGGGCCCTACANNCGGTGGAGCAACTACAC
AAACATGTCCCCGAGANCAAAACACCAGAGATCCGGCGACCCCCGGCGGCACCNGAACAA
ACCAAAACGCACCANCNACGCCAAACANTGGCCACACAAAAACAACAANNAGAACGAAAC

consensusID : consensus_1784#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence

                              [GCAGAATCGGCACGTGGGGACTTGCCAAGGGTAGCTGTTTGGCCGACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTACCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGCTGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGACGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGTACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAGAAGTTCACAGCTGTGCCTATGATCGAGAGATAATCTGTTCTACGTCATCATTCAAGTTTTGAATGTATATGAAAACCCGANCACGAATGCTCACTGGAGGGCATTGAGTCTCGGCAGAAAGTGGCATCGAACGATACTGTGCTGCATCGAAGCACTAGAAGCCGTGGCCAGCCGGACGGCCGCCAATTNCTGGCATGAGTGTCGCGAAG]

[+] EMBL BX469798             [GCAGAATCGGCACGTGGGGACTTGCCAAGGGTAGCTGTTTGGCCGACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTACCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGCTGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGACGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGTACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAGAAGTTCACAGCTGTGCCTATGATCGAGAGATAATCTGTTCTACGTCATCATTCAAGTTTTGAATGTATATGAAAACCCGANCACGAATGCTCACTGGAGGGCATTGAGTCTCGGCAGAAAGTGGCATCGAACGATACTGTGCTGCATCGAAGCACTAGAAGCCGTGGCCAGCCGGACGGCCGCCAATTNCTGGCATGAGTGTCGCGAAG]




>consensus_1784#1
GCAGAATCGGCACGTGGGGACTTGCCAAGGGTAGCTGTTTGGCCGACTATCGGTGGAATT
CCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTACCGATTCGGCCATTA
TTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGCTGCCACAACCGGGTG
GGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGACGACCAAGGAAACAC
TTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGTACTCAAACCCCCTGA
AGCCCAAATTTAACTTCGTTTCGGATGACAAGAAGTTCACAGCTGTGCCTATGATCGAGA
GATAATCTGTTCTACGTCATCATTCAAGTTTTGAATGTATATGAAAACCCGANCACGAAT
GCTCACTGGAGGGCATTGAGTCTCGGCAGAAAGTGGCATCGAACGATACTGTGCTGCATC
GAAGCACTAGAAGCCGTGGCCAGCCGGACGGCCGCCAATTNCTGGCATGAGTGTCGCGAA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1784#0      AGGCTTACAGGAGTATCTGGTGCAGCGTATCAGACCTTGCCAAGGGTAGCTGTTTGGCCG 60
consensus_1784#1      ---------------GCAGAATCGGCACGTGGGGACTTGCCAAGGGTAGCTGTTTGGCCG 45
                                      * *   * **   *  *  *************************

consensus_1784#0      ACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTA 120
consensus_1784#1      ACTATCGGTGGAATTCCGGTTCGGCTTACAAGGGTATTAGCTGGGATGAGCATCTGCCTA 105
                      ************************************************************

consensus_1784#0      CCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGC 180
consensus_1784#1      CCGATTCGGCCATTATTTTCCACCTCTTCTGCACGTATCTGGATAGTCAGCTGCGCCCGC 165
                      ************************************************************

consensus_1784#0      TGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGA 240
consensus_1784#1      TGCCACAACCGGGTGGGCGCCCCTTCTTCAACCGCTACGTCGTAGTAGGCGACAAGAAGA 225
                      ************************************************************

consensus_1784#0      CGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGT 300
consensus_1784#1      CGACCAAGGAAACACTTGCGGAAGTGAACACCAAAAATAAGGCCAAGTGTGCCATTCTGT 285
                      ************************************************************

consensus_1784#0      ACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAAA--TTCACAGCTG 358
consensus_1784#1      ACTCAAACCCCCTGAAGCCCAAATTTAACTTCGTTTCGGATGACAAGAAGTTCACAGCTG 345
                      ********************************************** *  **********

consensus_1784#0      TGCCTATGATCGAAA--TAATCTGTTCTACGTCATCATTCAATTTTCTAATGTATATGAA 416
consensus_1784#1      TGCCTATGATCGAGAGATAATCTGTTCTACGTCATCATTCAAGTTTTGAATGTATATGAA 405
                      ************* *  ************************* ***  ************

consensus_1784#0      AACCC-ACCACGAATGCTCACTGGACGGGCATTAA-TCTCGGCAGAA-GTGGCATC-AAC 472
consensus_1784#1      AACCCGANCACGAATGCTCACTGGA-GGGCATTGAGTCTCGGCAGAAAGTGGCATCGAAC 464
                      ***** * ***************** ******* * *********** ******** ***

consensus_1784#0      CATACTGTGCTGCATCGAAG-ACTAGAAGC-GTGGCAG--CGGACG--CGCCATTTT--- 523
consensus_1784#1      GATACTGTGCTGCATCGAAGCACTAGAAGCCGTGGCCAGCCGGACGGCCGCCAATTNCTG 524
                       ******************* ********* *****    ******  ***** **    

consensus_1784#0      --ATGAGTGTCGCCGAAATCGAAATTCATGAACAGGTGTTCAAATCCGGCATCGTCATGG 581
consensus_1784#1      GCATGAGTGTCGCGAAG------------------------------------------- 541
                        ***********  *                                            

consensus_1784#0      AAACGGGCGATTGGCGTACACGAAAAGGTATTGCTCATACACGGCACGAAATCTGGACAC 641
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      ACGGTACATGATTAGNCTCGTGGCTGTATCATGATGCTCTGGTTAAGTCCAATAACAACN 701
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      ACACAGAAATAAAATTTCACATTTGGCTCCGGATTNCAACCTAGGTATTTCCAAATAGTC 761
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      CGNCCATAATTNACCCGCANTACTTAATCAACNGGNNCNNGCANCGAACGCAAACTAGGA 821
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      CCGGGAGGAGGANACANACATTGANCCCACCANCGGCACTCAACACGCGCAANAAACGGC 881
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      ACGTCNCACGGGCGGAACAACCCAAACGGGGTGGAAACACCAACAAACCGGGGCCCTACA 941
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      NNCGGTGGAGCAACTACACAAACATGTCCCCGAGANCAAAACACCAGAGATCCGGCGACC 1001
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      CCCGGCGGCACCNGAACAAACCAAAACGCACCANCNACGCCAAACANTGGCCACACAAAA 1061
consensus_1784#1      ------------------------------------------------------------
                                                                                  

consensus_1784#0      ACAACAANNAGAACGAAAC 1080
consensus_1784#1      -------------------