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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence
[CCGCGGACGCGTGGGTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTAATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAACGGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAATCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAGGAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGTAAACCCTTTCA]
[+] EMBL BM634791 [CCGCGGACGCGTGGGTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTAATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAACGGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAATCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAGGAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGTAAACCCTTTCA]
consensusID : consensus_1801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAACCATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTAATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGCGGAAGA]
[+] EMBL BM647841 [CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAACCATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACGCTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCAAGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTAATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACAGCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAATCCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCAAACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGCTTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATAAGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGCGGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1801#0 ------------------------------------------------------------
consensus_1801#1 CCGGAAATATATACGAGATGCGATATGAATCGCTACTATTTTAGGCCATACTTTGGAAAC 60
consensus_1801#0 ---------------------CCGCGGACGCGTGGGTT--AACGGGCATTTCGATGAACG 37
consensus_1801#1 CATTAAATCAATTTAATATGAATGTATATAAATAACTTTTAACGGGCATTTCGATGAACG 120
* * * ** ********************
consensus_1801#0 CTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCA 97
consensus_1801#1 CTTCGGCGGAAGAAATCGAGTTGTTGCTTGCGGAAAGCAGCAACCGATTGCTCTCCGTCA 180
************************************************************
consensus_1801#0 AGTGTTTGTTTAAAGTTATGTTTTTGAGAAGAACGCTTGGTTTCAGGTTACACACAATTA 157
consensus_1801#1 AGTGTTTGTTTAAAGGTATGTTTTTGAGAAGAACGCTTGGATTCAGGTTACACACCATTA 240
*************** ************************ ************** ****
consensus_1801#0 ATAAACAATCACACACACAGCTAACAGACAAACAATTTGAAAGTAATACGGAAAGAAACA 217
consensus_1801#1 ATAAACAATCACACACACAGCTAACAGACAAACTATTTGAAAGTAATACGGAAAGAAACA 300
********************************* **************************
consensus_1801#0 GCCAAGGAAAAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAAT 277
consensus_1801#1 GCCAAGGAAGAGAAAAAGTAATAAATAGTGGAATTCAGTTCATCAACACCATAAACGAAT 360
********* **************************************************
consensus_1801#0 CCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCA 337
consensus_1801#1 CCAGCAGCTGATAACACATTCGCAATCAAACAATAGCAAAAGGAAGCGAAAGTACGGGCA 420
************************************************************
consensus_1801#0 AACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGC 397
consensus_1801#1 AACTTCAATAAAAATCAGGTCTAAGGTGAGGTGCTTACAATGAGAAGACACTATCAAAGC 480
************************************************************
consensus_1801#0 TTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATA 457
consensus_1801#1 TTACCCATCAAGTGAATAGTAACATCAACAAACAACAGAAGCACTACGAAGTGAAAAATA 540
************************************************************
consensus_1801#0 AGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACAAAATGTCAAAATTTCAAC 517
consensus_1801#1 AGCTACTAAACGCGGTTCAAAATTACAGTCAAAATTCATACCAAATGTCAAAATTTCAGC 600
***************************************** **************** *
consensus_1801#0 GGAAGATGATGATGCTGGAAAACGTTGTTTATTGTTGATTTGCTCAAAACAAAATTGAAA 577
consensus_1801#1 GGAAGA------------------------------------------------------ 606
******
consensus_1801#0 TCAAAAAGGAAAACTAAAACTAACGCAAAATTATTAACGATAGCCAACGACGAAAACGAG 637
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 GAAAAAACACACACTCCAGATAGGTGCGTATGCGAAGCATGGTTTGAACTTTGATATAGT 697
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 AAACCCTTTCA 708
consensus_1801#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||