cluster # 1833

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Anopheles gambiae
cluster # 1833 cluster # 1833 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1833#0 length = 966 sequences # 1

consensus_1833#1 length = 589 sequences # 1

consensusID : consensus_1833#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 966
fasta sequence

                              [ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACACTATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAATGAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAATAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNACAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATTTACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANAGTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCATACGNCCAGNTAATCGAGACGCCTAGGTCAGGTCTCTGACCTATAGATATAATGGAACNTTGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCGATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAACCACCAGACGGCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACACCCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAGCGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAAAAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACCCCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCANCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCCCNCGCCCN]

[+] EMBL AL694309             [ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACACTATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAATGAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAATAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNACAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATTTACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANAGTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCATACGNCCAGNTAATCGAGACGCCTAGGTCAGGTCTCTGACCTATAGATATAATGGAACNTTGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCGATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAACCACCAGACGGCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACACCCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAGCGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAAAAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACCCCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCANCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCCCNCGCCCN]




>consensus_1833#0
ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACAC
TATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAAT
GAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAA
TAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNA
CAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATT
TACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANA
GTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCAT
ACGNCCAGNTAATCGAGACGCCTAGGTCAGGTCTCTGACCTATAGATATAATGGAACNTT
GAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCGA
TACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAACC
ACCAGACGGCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACACCC
CTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAGCG
ACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAAAA
GCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACCCC
CGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCANC
GCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCCCN
CGCCCN

consensusID : consensus_1833#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [GCAGGTTAACCCAGAAATGATGCAAATTACACTAAGACACCCACTTCGGCGGCATCAAAACTCTGTGAGAGCTGTAATTGTATCAAAGACAAAGGTGTGTTTGACTGTACCAGTAAGCAAATTGGAGCAACATTATTCCCTCTAGAAGACTGGCAATCGCTGAACACAAATGGATTAGACGCGAAGTTGGTATTTCTTGTATCCACTGGCCTGAAAGAAATCACTCACTTTCCTTCCATGAATGTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAATGAANACTGGCTGTTTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATAATAGATTGCAAGCACGTGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCCATTATCAACANACTCACGTGTAGTTACAGTACTATGGCGCAAACGCATATACATTCACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGAGTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA]

[+] EMBL AL695610             [GCAGGTTAACCCAGAAATGATGCAAATTACACTAAGACACCCACTTCGGCGGCATCAAAACTCTGTGAGAGCTGTAATTGTATCAAAGACAAAGGTGTGTTTGACTGTACCAGTAAGCAAATTGGAGCAACATTATTCCCTCTAGAAGACTGGCAATCGCTGAACACAAATGGATTAGACGCGAAGTTGGTATTTCTTGTATCCACTGGCCTGAAAGAAATCACTCACTTTCCTTCCATGAATGTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAATGAANACTGGCTGTTTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATAATAGATTGCAAGCACGTGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCCATTATCAACANACTCACGTGTAGTTACAGTACTATGGCGCAAACGCATATACATTCACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGAGTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA]




>consensus_1833#1
GCAGGTTAACCCAGAAATGATGCAAATTACACTAAGACACCCACTTCGGCGGCATCAAAA
CTCTGTGAGAGCTGTAATTGTATCAAAGACAAAGGTGTGTTTGACTGTACCAGTAAGCAA
ATTGGAGCAACATTATTCCCTCTAGAAGACTGGCAATCGCTGAACACAAATGGATTAGAC
GCGAAGTTGGTATTTCTTGTATCCACTGGCCTGAAAGAAATCACTCACTTTCCTTCCATG
AATGTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAATGAANACTGGCTGTTTT
GCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATAATAGATTGCAAGCACGTGCA
NATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCCATTA
TCAACANACTCACGTGTAGTTACAGTACTATGGCGCAAACGCATATACATTCACTGAACC
CAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGAGTTTGAATC
CATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1833#0      ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACAC 60
consensus_1833#1      ------------------------------------------------------------
                                                                                  

consensus_1833#0      TATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAAT 120
consensus_1833#1      -----------------------GCAGGTTAACCCAGAA--ATGATGCAAATTACACTAA 35
                                               ******     **   *  ***  * *   ** * 

consensus_1833#0      GAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAA 180
consensus_1833#1      GACACCCACTTCGGCGGCATCAAA----ACTCTGTGAGAGCTG-TAATT-----GTATCA 85
                      ** * * *     *    * * **    ** ***    ** ** ****      * ** *

consensus_1833#0      TAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNA 240
consensus_1833#1      AAGACAAAGGTGT-GTTTGACTGTACCAGTAAGC---AAATTGGAGC---AACATTATTC 138
                       ***  *    ** *  * *** **  *  *  *    *  *  ***    *******  

consensus_1833#0      CAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATT 300
consensus_1833#1      CCTCTA--GAAGACTGGCAATCGCTGAACACAAATGGATTAG----ACGCGAAGTTGGTA 192
                      *  * *  *** **  ** **     **   *  * *  **     * *** *   * * 

consensus_1833#0      TACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANA 360
consensus_1833#1      TTTCTTGTATCCA--CTGGCCTGAAAGAAATCACTCACTTTCCTTCC-------ATGAAT 243
                      *   **  *   *  *  *  * *  ****  ******  * * *         *  *  

consensus_1833#0      GTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCAT 420
consensus_1833#1      GTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAAT------GAANACTGGCTGT 297
                      **  *   ***    *  * * **** *  ** *   ***       * * * * *   *

consensus_1833#0      ACGNCCAGNTAATCGAGACGCCTAG-GTCAGGTCTCTGACCTATAGATATAATGGAACNT 479
consensus_1833#1      TTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATA-ATAGATTGCAAGCACG 356
                          * *  * * **   *  *  * *  ** *** *  * ** * * **          

consensus_1833#0      TGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCG 539
consensus_1833#1      TGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCC 416
                      ** *    *    * * **    * *  **  ** *  *  * ** *    * * *  * 

consensus_1833#0      ATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAAC 599
consensus_1833#1      ATTATCA-ACANACTCACGTGTAGTTACAGTACTATGGCGC----AAACGCATATACATT 471
                      **  *** * * * **      **  * *  **       *    * **  **    *  

consensus_1833#0      CACCAGACG-GCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACAC 658
consensus_1833#1      CACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGA 531
                      ***   **    *         **     *   **  *  *    ***       * *  

consensus_1833#0      CCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAG 718
consensus_1833#1      GTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA-- 589
                         * *  **    ** *  ***   **    **    *   * **  *  ** **    

consensus_1833#0      CGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAA 778
consensus_1833#1      ------------------------------------------------------------
                                                                                  

consensus_1833#0      AAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACC 838
consensus_1833#1      ------------------------------------------------------------
                                                                                  

consensus_1833#0      CCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCA 898
consensus_1833#1      ------------------------------------------------------------
                                                                                  

consensus_1833#0      NCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCC 958
consensus_1833#1      ------------------------------------------------------------
                                                                                  

consensus_1833#0      CNCGCCCN 966
consensus_1833#1      --------