cluster # 1837

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Anopheles gambiae
cluster # 1837 cluster # 1837 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1837#0 length = 601 sequences # 1

consensus_1837#1 length = 543 sequences # 1

consensusID : consensus_1837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAGCGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGTGTTTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGAAGTGCAATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTGAAAAACTTTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAATGCGCTCTTGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATTAAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTTTTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAGTTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATAGTTATGATGCTCTGGTTG]

[+] EMBL AL694339             [GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAGCGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGTGTTTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGAAGTGCAATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTGAAAAACTTTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAATGCGCTCTTGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATTAAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTTTTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAGTTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATAGTTATGATGCTCTGGTTG]




>consensus_1837#0
GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGT
TATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAG
CGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTC
CGTGTTTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGAAGTGCAATGAAG
AATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTGAAAAACTTTCCGG
ACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAATGCGCTCTTGCACTTC
ATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATTAAAATAACTTTTATGCT
TATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTTTTCTATCCCAGTGTATG
TGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAGTTTCAACAGGGGGCTAT
GAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATAGTTATGATGCTCTGGTT
G

consensusID : consensus_1837#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [AGATGAACAAAAAGCAAAAGGACGCGAAAATTGGGGCAAACACATTTTAAATTCACCCTCCAACTCGCCATTTCTTTACGGGCGACAAATTTACTGGCTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCCGGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCAATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATGAAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACCCGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACGTTGTGTCGCAGAGCGCGATCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC]

[+] EMBL BM590869             [AGATGAACAAAAAGCAAAAGGACGCGAAAATTGGGGCAAACACATTTTAAATTCACCCTCCAACTCGCCATTTCTTTACGGGCGACAAATTTACTGGCTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCCGGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCAATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATGAAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACCCGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACGTTGTGTCGCAGAGCGCGATCGTTTCACCTTCAGTGTCACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC]




>consensus_1837#1
AGATGAACAAAAAGCAAAAGGACGCGAAAATTGGGGCAAACACATTTTAAATTCACCCTC
CAACTCGCCATTTCTTTACGGGCGACAAATTTACTGGCTCGCCCCAGTAACTCCGCAGGA
AAATGCATTTCATCTGCACGAATAACACCTCCAGCCCGGAGGTTGAGCACGCCGCTTCAC
GCCACAATAATTTCATTTCACTTATTAAATCAACCCAATTTTGCGCGTTCCTTCTGTCGC
TGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATGAAAAACAACGTCCCATAGCGAAA
TAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACCCGAAAAGTGCGCACATAATCGAA
TGCAACGTGCATTATGTGCATCGGGGAGGGCAAAGGCGTTATTGTTTAAATACAACGCGT
GCGCCCGTTCCCCCCTTCGGAACGTTGTGTCGCAGAGCGCGATCGTTTCACCTTCAGTGT
CACGTGGCGCGTTCCGAAAGTTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTC
ATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1837#0      GATCCCCCGAGGTTTAATCGAATGCACGTACATTATGTGCATCGGGGAGGGCAAAGGCGT 60
consensus_1837#1      -------------------AGATGAACAAAAAGCAAAAGGA-CGCGAAAATTGGGGCAAA 40
                                           *** **  * *  *   * * ** * *       *    

consensus_1837#0      TATTGTTTAAATACAACGCGCGCGCCCGTTCCCCCTTTTGCGGAACGTTGTGTCGCAGAG 120
consensus_1837#1      CACATTTTAAATTCACC-CTCCAACTCGC-CATTTCTTTACGGG-CGACAAATTTACTGG 97
                       *   ******* ** * * *   * **  *     *** ***  **     *      *

consensus_1837#0      CGCGACCCGTTTCACCTTCAGTGTCACGTGGCGCGTTC---CGAAAG-----TTTAAATT 172
consensus_1837#1      CTCGCCCCAGTAACTCCGCAGGAAAATGCATTTCATCTGCACGAATAACACCTCCAGCCC 157
                      * ** ***  *    *  ***    * *     * *     ****       *  *    

consensus_1837#0      AAAATTTCCGTGT----TTTTTTGTCGTCGTAGTCTCATCGTCGTCGCTGCGTGCAATGA 228
consensus_1837#1      GGAGGTTGAGCACGCCGCTTCACGCCACAATAATTTCATTTCACTTATTAAATCAACCCA 217
                        *  **  *        **   * *    ** * ****     *   *   *  *   *

consensus_1837#0      AGTGCA-ATGAAGAATCTACGGGACACAGCAAGGTGCACGCGCAAGGGTGAAAAGCGTTG 287
consensus_1837#1      ATTTTGCGCGTTCCTTCTGTCGCTGTCTCGTTGGCAAAAGAGAGAGAGAGAGAGAGAATG 277
                      * *      *     ***   *    *     **   * * *  ** * ** *     **

consensus_1837#0      AAAAACT---TTCCGGACAAGATTCGCCGTGTCGCTTGCAGTCGCTTGTGCCGTTATAAA 344
consensus_1837#1      AAAAACAACGTCCCATAGCGAAATAATAAATTGATCCGCGTTCGGCTTTCGGCTCGCACC 337
                      ******    * **  *    * *       *     **  ***  * *    *   *  

consensus_1837#0      TGCGCTCT-TGCACTTCATCGGTGACGATGAGCCAGGCGCGCGCGCTCGGAAAGGGCATT 403
consensus_1837#1      CGAAAAGTGCGCACATAATCGAATGCAACGTGCATTATGTGCA---TCGGGGAGGGCA-- 392
                       *     *  **** * ****    * * * **     * **    ****  ******  

consensus_1837#0      AAAATAACTTTTATGCTTATCATTTTATGCATCGATGCGAGCCATCTTCTGGACAATCTT 463
consensus_1837#1      ---AAGGCGTTATTGTTTAA-ATACAACGCGTGCGCCCGTTCCCCCCTTCGGAACG---- 444
                         *   * **  ** ***  **   * ** *     **  **  * *  ***       

consensus_1837#0      TTCTATCCCAGTGTATGTGTGAAGCGCACTATCGCATCCTTTCGACAGGGCGATGAAAAG 523
consensus_1837#1      TTGTGTCGCAGAGCGCGATCGT--TTCACCTTCAGTGTCACGTGGCGCGTT--CCGAAAG 500
                      ** * ** *** *   *   *     ***  **     *    * *  *       ****

consensus_1837#0      TTTCAACAGGGGGCTATGAATTTCTCCCGGTCGCAGCATGATCATGCGATGATGATCATA 583
consensus_1837#1      TTTAAATTAAAATTTCCGATTTTTTTGTCGTCGTTGTCTCATC----------------- 543
                      *** **        *  ** *** *    ****  *  * ***                 

consensus_1837#0      GTTATGATGCTCTGGTTG 601
consensus_1837#1      ------------------