cluster # 1839

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Anopheles gambiae
cluster # 1839 cluster # 1839 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1839#0 length = 551 sequences # 1

consensus_1839#1 length = 164 sequences # 1

consensusID : consensus_1839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGCCCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCACCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTGGGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTATTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCAGCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTNCCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAATTGGCNNCGTA]

[+] EMBL AL934485             [CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGCCCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCACCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTGGGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTATTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCAGCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTNCCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAATTGGCNNCGTA]




>consensus_1839#0
CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGC
CCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCA
CCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATG
GCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGT
ACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTG
GGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTA
TTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCA
GCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTN
CCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAA
TTGGCNNCGTA

consensusID : consensus_1839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [CGAGGTTTGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGGTGCACTGCGTACGCTGATGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACGTCCACTTTCCACCCGGCATGCTGCGACCGGGCGG]

[+] EMBL AL694347             [CGAGGTTTGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGGTGCACTGCGTACGCTGATGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACGTCCACTTTCCACCCGGCATGCTGCGACCGGGCGG]




>consensus_1839#1
CGAGGTTTGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGGTGCA
CTGCGTACGCTGATGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGAT
TTTACGTACGTCCACTTTCCACCCGGCATGCTGCGACCGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1839#0      CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGC 60
consensus_1839#1      ------------------------------------------------------------
                                                                                  

consensus_1839#0      CCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCA 120
consensus_1839#1      ------------------------------------------------------------
                                                                                  

consensus_1839#0      CCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATG 180
consensus_1839#1      -------------------------CGAGGTT-TGATGGCCAAATCCAAGTCTAGCGATG 34
                                                 *      **************************

consensus_1839#0      GCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGT 240
consensus_1839#1      GCTATCAGCGCGGCGTTTACG-GTGCACTGCGTACGCTGAT-GCACTTCATCGTGGCGGT 92
                      ********************* ******************* ******************

consensus_1839#0      ACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTG 300
consensus_1839#1      ACAGTTCTCGTACGGCATTTACTACGATTTTACGTACG---TCCACT---TTCCACCCGG 146
                      *************************************     *****   * * **** *

consensus_1839#0      GGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTA 360
consensus_1839#1      CATGCTGC-----GACCGGGCGG------------------------------------- 164
                           ***     ****  * *                                      

consensus_1839#0      TTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCA 420
consensus_1839#1      ------------------------------------------------------------
                                                                                  

consensus_1839#0      GCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTN 480
consensus_1839#1      ------------------------------------------------------------
                                                                                  

consensus_1839#0      CCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAA 540
consensus_1839#1      ------------------------------------------------------------
                                                                                  

consensus_1839#0      TTGGCNNCGTA 551
consensus_1839#1      -----------