cluster # 1845

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Anopheles gambiae
cluster # 1845 cluster # 1845 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1845#0 length = 530 sequences # 1

consensus_1845#1 length = 415 sequences # 1

consensusID : consensus_1845#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [CAGATCGCAGAGGTAACGTACTCGGTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTGATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTCGAAAACTACTTCACACCCTGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGGCTGCTAAAGAAAACGTCCCCGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCGCTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCCTGGGACACGCTGCTGCGCGTGTGGGACTGCTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTAGCACTCGTCATCATCGGAGCCACGCTTGGGCCGCAGAAGGTGCGGTCCCAGTGCAACGGGCTGTGCGAAACGCTGGCGGTGCTGCGCTCACCGCCGAAGAAGTTTCTCGAGGAGGATTTCATCATGCACCACATCTTTCGGCTGAACATC]

[+] EMBL AL696929             [CAGATCGCAGAGGTAACGTACTCGGTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTGATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTCGAAAACTACTTCACACCCTGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGGCTGCTAAAGAAAACGTCCCCGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCGCTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCCTGGGACACGCTGCTGCGCGTGTGGGACTGCTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTAGCACTCGTCATCATCGGAGCCACGCTTGGGCCGCAGAAGGTGCGGTCCCAGTGCAACGGGCTGTGCGAAACGCTGGCGGTGCTGCGCTCACCGCCGAAGAAGTTTCTCGAGGAGGATTTCATCATGCACCACATCTTTCGGCTGAACATC]




>consensus_1845#0
CAGATCGCAGAGGTAACGTACTCGGTGTACAATCCGACCGTGGGCTACTGTCAGGCACAG
GCCCCGATCGCCGCCTTCCTGCTGATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTC
GTCGCTATTTGTGACAAATACCTCGAAAACTACTTCACACCCTGGCTCGAGATGTTGCAG
CGCGACGCGGGCATGCTGAACCGGCTGCTAAAGAAAACGTCCCCGGCCGCTTACCGCACC
TGCAGAAGCACAACGTCGATCCGCTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGA
CGCGCACGCTGCCCTGGGACACGCTGCTGCGCGTGTGGGACTGCTTCCTTTGCGAAGGGG
TGCGAATCTTTTTCAAGGTAGCACTCGTCATCATCGGAGCCACGCTTGGGCCGCAGAAGG
TGCGGTCCCAGTGCAACGGGCTGTGCGAAACGCTGGCGGTGCTGCGCTCACCGCCGAAGA
AGTTTCTCGAGGAGGATTTCATCATGCACCACATCTTTCGGCTGAACATC

consensusID : consensus_1845#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CCGAGGTTACGACGACAGCCGGGCCAGAAGGAGCTGTTCAACGTGCTGAAAGCGTACTCGGTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTGATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTCGAAAACTACTTCACACCCGGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGGTGCTAAAGAAAACGTTCCCGGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCGCTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCTGGGACACGCTGCTGCGCGTGTGGGACTGGTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTA]

[+] EMBL AL694386             [CCGAGGTTACGACGACAGCCGGGCCAGAAGGAGCTGTTCAACGTGCTGAAAGCGTACTCGGTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTGATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTCGAAAACTACTTCACACCCGGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGGTGCTAAAGAAAACGTTCCCGGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCGCTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCTGGGACACGCTGCTGCGCGTGTGGGACTGGTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTA]




>consensus_1845#1
CCGAGGTTACGACGACAGCCGGGCCAGAAGGAGCTGTTCAACGTGCTGAAAGCGTACTCG
GTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTG
ATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTC
GAAAACTACTTCACACCCGGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGG
TGCTAAAGAAAACGTTCCCGGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCGC
TGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCTGGGACACGCT
GCTGCGCGTGTGGGACTGGTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1845#0      ------------------------------------CAGATCGCAGAGGTAACGTACTCG 24
consensus_1845#1      CCGAGGTTACGACGACAGCCGGGCCAGAAGGAGCTGTTCAACGTGCTGAAAGCGTACTCG 60
                                                             * **    *  * ********

consensus_1845#0      GTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTG 84
consensus_1845#1      GTGTACAATCCGACCGTGGGCTACTGTCAGGCACAGGCCCCGATCGCCGCCTTCCTGCTG 120
                      ************************************************************

consensus_1845#0      ATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTC 144
consensus_1845#1      ATGCAGCTGCCCTCCGAGCAGGCGTTCTGGTGCTTCGTCGCTATTTGTGACAAATACCTC 180
                      ************************************************************

consensus_1845#0      GAAAACTACTTCACACCCTGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGG 204
consensus_1845#1      GAAAACTACTTCACACCCGGGCTCGAGATGTTGCAGCGCGACGCGGGCATGCTGAACCGG 240
                      ****************** *****************************************

consensus_1845#0      CTGCTAAAGAAAACGTCCCCGG-CCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCG 263
consensus_1845#1      -TGCTAAAGAAAACGTTCCCGGGCCGCTTACCGCACCTGCAGAAGCACAACGTCGATCCG 299
                       *************** ***** *************************************

consensus_1845#0      CTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCCCTGGGACACG 323
consensus_1845#1      CTGCTGTACATGACCGACTGGTTCCTGTGTGCGATGACGCGCACGCTGCC-TGGGACACG 358
                      ************************************************** *********

consensus_1845#0      CTGCTGCGCGTGTGGGACTGCTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTAGCA 383
consensus_1845#1      CTGCTGCGCGTGTGGGACTGGTTCCTTTGCGAAGGGGTGCGAATCTTTTTCAAGGTA--- 415
                      ******************** ************************************   

consensus_1845#0      CTCGTCATCATCGGAGCCACGCTTGGGCCGCAGAAGGTGCGGTCCCAGTGCAACGGGCTG 443
consensus_1845#1      ------------------------------------------------------------
                                                                                  

consensus_1845#0      TGCGAAACGCTGGCGGTGCTGCGCTCACCGCCGAAGAAGTTTCTCGAGGAGGATTTCATC 503
consensus_1845#1      ------------------------------------------------------------
                                                                                  

consensus_1845#0      ATGCACCACATCTTTCGGCTGAACATC 530
consensus_1845#1      ---------------------------