cluster # 1850

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Anopheles gambiae
cluster # 1850 cluster # 1850 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1850#0 length = 528 sequences # 1

consensus_1850#1 length = 509 sequences # 1

consensusID : consensus_1850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [AGAATCCCCGCAGGTTTAAATTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTTTCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCACGGGCTGCACTGGATTTCGGAGGGTTGTAGTTCCATTATCGGTTCACTACACTGGCACGGCCAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTTGAAGGTGTGCGTTCCTTCTGTTTCTCGTCAAGGGGCTACGTTATACAGGCAGCTCCACTTTAAATCGTTATCAAAACACCGATATACACCCAGCTCCTACTCCCCTGTTCTTCATTCGGGGTGGAGGTGGTTGAAGCATGGGAAGTGTATTATAAAATATGCAAACCTCCTTCTCAACCACTGGGTATNTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATNTACTCCCACCCCCCCCACATTCGACATAAAAATAATAACTCATNTCGATNTCTCACATNCATCTTCATNCCGAAA]

[+] EMBL AL694807             [AGAATCCCCGCAGGTTTAAATTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTTTCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCACGGGCTGCACTGGATTTCGGAGGGTTGTAGTTCCATTATCGGTTCACTACACTGGCACGGCCAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTTGAAGGTGTGCGTTCCTTCTGTTTCTCGTCAAGGGGCTACGTTATACAGGCAGCTCCACTTTAAATCGTTATCAAAACACCGATATACACCCAGCTCCTACTCCCCTGTTCTTCATTCGGGGTGGAGGTGGTTGAAGCATGGGAAGTGTATTATAAAATATGCAAACCTCCTTCTCAACCACTGGGTATNTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATNTACTCCCACCCCCCCCACATTCGACATAAAAATAATAACTCATNTCGATNTCTCACATNCATCTTCATNCCGAAA]




>consensus_1850#0
AGAATCCCCGCAGGTTTAAATTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTT
TCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCAC
GGGCTGCACTGGATTTCGGAGGGTTGTAGTTCCATTATCGGTTCACTACACTGGCACGGC
CAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTTGAAGGTGTGCGTT
CCTTCTGTTTCTCGTCAAGGGGCTACGTTATACAGGCAGCTCCACTTTAAATCGTTATCA
AAACACCGATATACACCCAGCTCCTACTCCCCTGTTCTTCATTCGGGGTGGAGGTGGTTG
AAGCATGGGAAGTGTATTATAAAATATGCAAACCTCCTTCTCAACCACTGGGTATNTCTC
CTCTCTCCCACTCCGGGTGGCCTTACTCTCATNTACTCCCACCCCCCCCACATTCGACAT
AAAAATAATAACTCATNTCGATNTCTCACATNCATCTTCATNCCGAAA

consensusID : consensus_1850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [AGGTTTAATTTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTTTCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCACGGGCTGCACTGGATTTCGGAGGGTTGTGTTCCATTATCGGTTCACTACACTGGCACGGCAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTGAAGGTGTGCGTTCCTTCTGTTTCTCGTCAAAGGGGCTCGTTATACAGGCAGCTCCACTTTAAATCGTTATCAAAACAACCCGATATACACCCCAGTCCTCTCCCCTGTTTCTTTCATTCGGGGTGGGAGGTGGTTGAAGCATGGGAAGTGTATTATAAACATATGCAAACCTCCTTCTCAACCACTGGGTATTTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATTTACTCCCACGGGGGACATTCGCGGCCATAAAAATAATACTATTGATTTTACATTCATTTCTTCAT]

[+] EMBL AL694404             [AGGTTTAATTTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTTTCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCACGGGCTGCACTGGATTTCGGAGGGTTGTGTTCCATTATCGGTTCACTACACTGGCACGGCAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTGAAGGTGTGCGTTCCTTCTGTTTCTCGTCAAAGGGGCTCGTTATACAGGCAGCTCCACTTTAAATCGTTATCAAAACAACCCGATATACACCCCAGTCCTCTCCCCTGTTTCTTTCATTCGGGGTGGGAGGTGGTTGAAGCATGGGAAGTGTATTATAAACATATGCAAACCTCCTTCTCAACCACTGGGTATTTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATTTACTCCCACGGGGGACATTCGCGGCCATAAAAATAATACTATTGATTTTACATTCATTTCTTCAT]




>consensus_1850#1
AGGTTTAATTTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTTTCGCGAGAGAG
ATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCACGGGCTGCACTG
GATTTCGGAGGGTTGTGTTCCATTATCGGTTCACTACACTGGCACGGCAATCAAAAATCC
AATCAAAAGCGTCCCCATCGTATCCGTCAGTGTGAAGGTGTGCGTTCCTTCTGTTTCTCG
TCAAAGGGGCTCGTTATACAGGCAGCTCCACTTTAAATCGTTATCAAAACAACCCGATAT
ACACCCCAGTCCTCTCCCCTGTTTCTTTCATTCGGGGTGGGAGGTGGTTGAAGCATGGGA
AGTGTATTATAAACATATGCAAACCTCCTTCTCAACCACTGGGTATTTCTCCTCTCTCCC
ACTCCGGGTGGCCTTACTCTCATTTACTCCCACGGGGGACATTCGCGGCCATAAAAATAA
TACTATTGATTTTACATTCATTTCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1850#0      AGAATCCCCGCAGGTTTAAATTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTT 60
consensus_1850#1      -----------AGGTTTAATTTTCATAAGGTTGATGAAAAACGTATTTCTCATGTGGCTT 49
                                 ******** ****************************************

consensus_1850#0      TCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCAC 120
consensus_1850#1      TCGCGAGAGAGATAAATTAATTAATTTCATGACGTTAATCTTGCCGTGCGCGGTGCTCAC 109
                      ************************************************************

consensus_1850#0      GGGCTGCACTGGATTTCGGAGGGTTGTAGTTCCATTATCGGTTCACTACACTGGCACGGC 180
consensus_1850#1      GGGCTGCACTGGATTTCGGAGGGTTGT-GTTCCATTATCGGTTCACTACACTGGCACGGC 168
                      *************************** ********************************

consensus_1850#0      CAATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGTTGAAGGTGTGCGTT 240
consensus_1850#1      -AATCAAAAATCCAATCAAAAGCGTCCCCATCGTATCCGTCAGTGT-GAAGGTGTGCGTT 226
                       ********************************************* *************

consensus_1850#0      CCTTCTGTTTCTCGTCAAGGGGCTACGTTATACAGGCAGCTCCACTTTAAATCGTTATCA 300
consensus_1850#1      CCTTCTGTTTCTCGTCAAAGGGGCTCGTTATACAGGCAGCTCCACTTTAAATCGTTATCA 286
                      ****************** ***   ***********************************

consensus_1850#0      AAACA--CCGATATACACCCAGCTCCTACTCCCCTGTTC--TTCATTCGGGGTGG-AGGT 355
consensus_1850#1      AAACAACCCGATATACACCCCAGTCCT-CTCCCCTGTTTCTTTCATTCGGGGTGGGAGGT 345
                      *****  *************   **** **********   ************** ****

consensus_1850#0      GGTTGAAGCATGGGAAGTGTATTATAAA-ATATGCAAACCTCCTTCTCAACCACTGGGTA 414
consensus_1850#1      GGTTGAAGCATGGGAAGTGTATTATAAACATATGCAAACCTCCTTCTCAACCACTGGGTA 405
                      **************************** *******************************

consensus_1850#0      TNTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATNTACTCCCACCCCCCCCACATT 474
consensus_1850#1      TTTCTCCTCTCTCCCACTCCGGGTGGCCTTACTCTCATTTACTCCCACGGGGGACATTCG 465
                      * ************************************ *********      **    

consensus_1850#0      CGAC-ATAAAAATAATAACTCATNTCGATNTCTCACATNCATCTTCATNCCGAAA 528
consensus_1850#1      CGGCCATAAAAATAATAC----TATTGATTTTACATTCATTTCTTCAT------- 509
                      ** * ************     * * *** *  **      *******