cluster # 1858

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Anopheles gambiae
cluster # 1858 cluster # 1858 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1858#0 length = 793 sequences # 1

consensus_1858#1 length = 637 sequences # 1

consensusID : consensus_1858#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence

                              [GTGTACAAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTACCTTGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGTTTTTAAATATAACACTGTGATAACGGAATTATGACGCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAACATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCAGTTTACTATTTTATGTGATGTTGAAGGATTCTAAAGCAAGTAGAAAGGCAAATTATCACAGTCGCATTTTCTACGGCCTTGTGTTTTCTGTTTTGGGAGATTTTTTATTAAATTATGAATTATTTGAACCCGGCATGGGTGCTTTTGGTGTGGCACAAATATTCTACATATGGGCGTTTGGAATGAAACTGAACAAACTATGGATCGGTACAATTTTATACCTAACAGGGTTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCCTACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACAGATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTGACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCATGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT]

[+] EMBL BX623833             [GTGTACAAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTACCTTGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGTTTTTAAATATAACACTGTGATAACGGAATTATGACGCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAACATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCAGTTTACTATTTTATGTGATGTTGAAGGATTCTAAAGCAAGTAGAAAGGCAAATTATCACAGTCGCATTTTCTACGGCCTTGTGTTTTCTGTTTTGGGAGATTTTTTATTAAATTATGAATTATTTGAACCCGGCATGGGTGCTTTTGGTGTGGCACAAATATTCTACATATGGGCGTTTGGAATGAAACTGAACAAACTATGGATCGGTACAATTTTATACCTAACAGGGTTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCCTACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACAGATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTGACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCATGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT]




>consensus_1858#0
GTGTACAAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATT
AATTACCTTGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGTTTTTAAATATAACA
CTGTGATAACGGAATTATGACGCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTC
AATGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAACATACGGA
ACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCAGTTTACTATTTTA
TGTGATGTTGAAGGATTCTAAAGCAAGTAGAAAGGCAAATTATCACAGTCGCATTTTCTA
CGGCCTTGTGTTTTCTGTTTTGGGAGATTTTTTATTAAATTATGAATTATTTGAACCCGG
CATGGGTGCTTTTGGTGTGGCACAAATATTCTACATATGGGCGTTTGGAATGAAACTGAA
CAAACTATGGATCGGTACAATTTTATACCTAACAGGGTTCTTAGCAATCACTCTATTTTT
TGAAAATTTAAACACGGTGATTAAAATTTGCCTACCATTTTATGCTATTCTATTGTTAAC
CATGTGCTGGAGATCATTGGCTAGAATCGACAGATCGGATAGCTATTTGCGGATTGTGTG
TGGCATCGCTAGTATATTATTTGTAATATCTGACGGTATAATAGCAATCGACAAATTTTT
CACTCCTATAAAATCGGCTCAAACGTATATCATGATAACGTACTATCTCGCACAAGTCGG
AATCACGCTTAGT

consensusID : consensus_1858#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGATATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTACCTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAGTGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTTATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCATTTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACACTTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACATATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAACAGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT]

[+] EMBL AL694437             [AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGATATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTACCTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAGTGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAATGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAACGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTTATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCATTTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACACTTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACATATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAACAGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT]




>consensus_1858#1
AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGAT
ATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTAC
CTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAG
TGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAA
TGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAA
CGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTT
ATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCAT
TTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACAC
TTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACAT
ATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAAC
AGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1858#0      ------------------------------------------------------GTGTAC 6
consensus_1858#1      AGAATCCCCCGAGGTTAAATTGAGCATAGTGGAGAATACTCAAGTGAAGAAATTTTAGAT 60
                                                                             *  * 

consensus_1858#0      AAGAAACTGGTGGTATGAATCCTGCTTCAGTTATAAAAGATTGAGTTTTCAATTAATTAC 66
consensus_1858#1      ATAGGTATACAATTGTTATTCGTGTACAAGAAACTGGTGATTGAGTTTTCAATTAATTAC 120
                      *      *     * * * ** **    **  *     **********************

consensus_1858#0      CT-TGGCGGCATAAACGAAATAAGAAGAAATCAATTTTTGT-TTTTAAATATAACACT-G 123
consensus_1858#1      CTATGGCGGCATAAACGAAATAAGAAGAAATTAATTTTTGTATTTTGAATATAACACTAG 180
                      ** **************************** ********* **** *********** *

consensus_1858#0      TGATAACGGAATTATGACGC-AAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAA 182
consensus_1858#1      TGATAACGGAATTATGACGCCAAAATGCAATCGACCGAAAAGACAAATCAACTATCTCAA 240
                      ******************** ***************************************

consensus_1858#0      TGCTGATACCGTTTATAACATCAGTAATAATGTATTTTTCGTTGATTCAAC-ATACGGAA 241
consensus_1858#1      TGCTGATACCGTTTATAACATCGGTAATAATGTATTTTTCGTTGATTCAACCATACGGAA 300
                      ********************** **************************** ********

consensus_1858#0      CGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGCCCATATTCA-GTTTACTAT-TTT 299
consensus_1858#1      CGTAGCAGCACATCTTCAACAGTGCTTAAATGCATGNCCATATTCNAGTTTACTATATTT 360
                      ************************************ ********  ********* ***

consensus_1858#0      AT-GTGATGTTGAAGGATTCT--AAAGCAAGTAG-AAAGGCAAATTATCACAGTCGC-AT 354
consensus_1858#1      ATAGTGATGTTGCAGGATTTCTAAAGGCAAGTAGCAAAAGCCAATTATCACAGTCGCCAT 420
                      ** ********* ******    ** ******** *** ** *************** **

consensus_1858#0      TTTCTACGGCCTT---GTGTTTTCTGTTTTGGG---AGATTTTTTATTAAATTATGA--- 405
consensus_1858#1      TTTCTACGGGCCTATGGTGTTTACTAGTGTGGGCAGANATTCTTCATTAAATTATGACAC 480
                      ********* * *   ****** **  * ****   * *** ** ************   

consensus_1858#0      ---ATTATTTGAACCCGGC-ATGGGTGCTTT--TGGT--GTGGC-ACAAATATTCTACAT 456
consensus_1858#1      TTCATTTTGAAACCCCGGCCATGGGTGCTATAACGGTCGGTGGCCACAAATATTCTACAT 540
                         *** *   * ****** ********* *   ***  ***** ***************

consensus_1858#0      ATGGGCGTTTGGAATG-AAACTGAACAAACTATGG-ATCGGTACAATTTTATACC-TAAC 513
consensus_1858#1      ATGGGCGTTGGACCTGCAAACTAAACAAACTATGGCATTGGTACAATTTTATACCCTAAC 600
                      ********* *   ** ***** ************ ** **************** ****

consensus_1858#0      AGGG-TTCTTAGCAATCACTCTATTTTTTGAAAATTTAAACACGGTGATTAAAATTTGCC 572
consensus_1858#1      AGGGGTTCTTAGCNATCACTCTANTCTCTGAAACTTT----------------------- 637
                      **** ******** ********* * * ***** ***                       

consensus_1858#0      TACCATTTTATGCTATTCTATTGTTAACCATGTGCTGGAGATCATTGGCTAGAATCGACA 632
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      GATCGGATAGCTATTTGCGGATTGTGTGTGGCATCGCTAGTATATTATTTGTAATATCTG 692
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      ACGGTATAATAGCAATCGACAAATTTTTCACTCCTATAAAATCGGCTCAAACGTATATCA 752
consensus_1858#1      ------------------------------------------------------------
                                                                                  

consensus_1858#0      TGATAACGTACTATCTCGCACAAGTCGGAATCACGCTTAGT 793
consensus_1858#1      -----------------------------------------