cluster # 1890

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Anopheles gambiae
cluster # 1890 cluster # 1890 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1890#0 length = 781 sequences # 1

consensus_1890#1 length = 696 sequences # 1

consensusID : consensus_1890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence

                              [CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACAATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCCCTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTACTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGCACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATAAGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAGCTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTATTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGAGAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCCGCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCAATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGGCGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTANATAAACTATAGNNANATACGCACATTATTTGAGCGCTGATANGACGGTAGATAACANNCTT]

[+] EMBL AL694568             [CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACAATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCCCTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTACTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGCACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATAAGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAGCTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTATTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGAGAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCCGCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCAATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGGCGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTANATAAACTATAGNNANATACGCACATTATTTGAGCGCTGATANGACGGTAGATAACANNCTT]




>consensus_1890#0
CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACA
ATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCC
CTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTA
CTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGC
ACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATA
AGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAG
CTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTA
TTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGA
GAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCC
GCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCA
ATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGG
CGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTAN
ATAAACTATAGNNANATACGCACATTATTTGAGCGCTGATANGACGGTAGATAACANNCT
T

consensusID : consensus_1890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCATCTACTGAAGGATTATTATACGCTCACTAATGGGACAGGGAATAATAGGAGAAGGGAGAAATGTTTGCCTTTTTAAAATGCAACTCTATGTAACAGAATTGAACGAGTATAGAAAGCGTTTAGTTACTAACAGAAGCGAAGAAGGTAGTGTTGGGCATAGTGAACCAGCTAGCTAAATAGGGTAGGGTTTGATCGTTTTGAGTTTTCCGTTTGTCCTATTTGCGAGTAGAGAGAGAGAGAGTAGCGTGGACATCGACAATTGATCTTGGACACATATCATATGCGCCCGCTCATTGGTACATCATATGCGTGATATAACATTTCCACACCCCCTTTCCCACCCCATCCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAGCGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTGACGCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATGCAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCGCTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCACACGCACGCAGGCAG]

[+] EMBL BM621176             [CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCATCTACTGAAGGATTATTATACGCTCACTAATGGGACAGGGAATAATAGGAGAAGGGAGAAATGTTTGCCTTTTTAAAATGCAACTCTATGTAACAGAATTGAACGAGTATAGAAAGCGTTTAGTTACTAACAGAAGCGAAGAAGGTAGTGTTGGGCATAGTGAACCAGCTAGCTAAATAGGGTAGGGTTTGATCGTTTTGAGTTTTCCGTTTGTCCTATTTGCGAGTAGAGAGAGAGAGAGTAGCGTGGACATCGACAATTGATCTTGGACACATATCATATGCGCCCGCTCATTGGTACATCATATGCGTGATATAACATTTCCACACCCCCTTTCCCACCCCATCCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAGCGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTGACGCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATGCAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCGCTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCACACGCACGCAGGCAG]




>consensus_1890#1
CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCATCTACTGAAGGATTATTAT
ACGCTCACTAATGGGACAGGGAATAATAGGAGAAGGGAGAAATGTTTGCCTTTTTAAAAT
GCAACTCTATGTAACAGAATTGAACGAGTATAGAAAGCGTTTAGTTACTAACAGAAGCGA
AGAAGGTAGTGTTGGGCATAGTGAACCAGCTAGCTAAATAGGGTAGGGTTTGATCGTTTT
GAGTTTTCCGTTTGTCCTATTTGCGAGTAGAGAGAGAGAGAGTAGCGTGGACATCGACAA
TTGATCTTGGACACATATCATATGCGCCCGCTCATTGGTACATCATATGCGTGATATAAC
ATTTCCACACCCCCTTTCCCACCCCATCCACCTTCTACTAATACTTTATCAAGCAATAGT
CAGTGGACGGCTTCGTTTGTCGAGCGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAA
CTTTTTCATACCACATATTGACGCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTG
AATCTGATGTATATGTAATATGCAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCG
GTGCGGTGGGTGAGTGCGCCCGCTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCA
ACAAGCACACACGCACACGCACACGCACGCAGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1890#0      CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACA 60
consensus_1890#1      ------------------------------------------------------------
                                                                                  

consensus_1890#0      ATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCC 120
consensus_1890#1      ------------------------------------------------------------
                                                                                  

consensus_1890#0      CTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTA 180
consensus_1890#1      --------------CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCC-ATCTA 45
                                       ************************************* *****

consensus_1890#0      CTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGC 240
consensus_1890#1      CTGAA--GGAT-TATTATACGCTCACTAATGGGACAGGG-AATAATAGG-AGAAGGGAGA 100
                      **  *  **** *************************** ********* ********* 

consensus_1890#0      ACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATA 300
consensus_1890#1      A--ATGTTTGCCT-TTTTAAA---ATGCAACTCTATGTAACAG-AATTGAACGA-GTATA 152
                      *  ********** ***** *   ***************** * *********  *****

consensus_1890#0      AGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAG 360
consensus_1890#1      -GAAAGCGTTT--AGTTACTAACAG----------------AAGCG---AAGAAGGTAG- 189
                       **********   **    ****                 * ***   *  *****   

consensus_1890#0      CTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTA 420
consensus_1890#1      -TGTTGGG-----CATAGTGAA---CCAGCT--AGCT---AAATAG-GGTAGGG------ 228
                       **** **     **   ** *   ******  ****   **  ** ***   *      

consensus_1890#0      TTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGA 480
consensus_1890#1      TTTGATCGTTTT-----GAGTTTTCCGTTTGT-------CCTAT-TTGCG----AGTAGA 271
                      **  **** * *     ******* *   * *       * *** *****    *  ***

consensus_1890#0      GAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCC 540
consensus_1890#1      GAGAGAGAGAGTAG-CGTGGACATCGACAATTG-ATCTTGGACACATATCATATGCGCCC 329
                      ************** ****************** **************************

consensus_1890#0      GCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCA 600
consensus_1890#1      GCTCATTGGTACA-TCATATGCGTGATATAACATTTCCACACCCCCTTT---CCCACCCC 385
                      ************* ******************* ** ** *********   ******* 

consensus_1890#0      ATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGG 660
consensus_1890#1      AT-CCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAG 444
                      ** * *******      * *   *  *   *  * **    *   *  ***  * *  *

consensus_1890#0      CGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTAN 720
consensus_1890#1      CGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTG--AC 502
                      **   *        * *  *        *    ** *         *   *  ***  * 

consensus_1890#0      ATAAACTATAGNNANATACGCACATTAT-TTGAGCGCTGATANGACG-GTAGATAACANN 778
consensus_1890#1      GCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATG 562
                          * * * *  * * **     *  * *****     **  ** *  **  *** *  

consensus_1890#0      CTT--------------------------------------------------------- 781
consensus_1890#1      CAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCG 622
                      *                                                           

consensus_1890#0      ------------------------------------------------------------
consensus_1890#1      CTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCAC 682
                                                                                  

consensus_1890#0      --------------
consensus_1890#1      ACGCACGCAGGCAG 696