cluster # 19

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Anopheles gambiae
cluster # 19 cluster # 19 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_19#0 length = 625 sequences # 1

consensus_19#1 length = 484 sequences # 1

consensusID : consensus_19#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGATAAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTTAAAGCAACCGAACAACAGCAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCACTCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCGTCCCCGGACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTGGCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGACGAATCAAGCGAGCAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCAGCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGATGATTTGCTGCTTACCGATTACGTCACCTGGA]

[+] EMBL BM632433             [CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGATAAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTTAAAGCAACCGAACAACAGCAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCACTCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCGTCCCCGGACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTGGCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGACGAATCAAGCGAGCAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCAGCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGATGATTTGCTGCTTACCGATTACGTCACCTGGA]




>consensus_19#0
CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGAT
AAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAG
CCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCT
TCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTTAAAGCAACCGAACAACAGCAG
GAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCACTCG
CCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCGTCC
CCGGACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTGGCAAG
CAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGACGAATCA
AGCGAGCAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCAGCTAGCG
TCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGATGATTTG
CTGCTTACCGATTACGTCACCTGGA

consensusID : consensus_19#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAAAAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCCCGTCGGAACCGGTGCACTTTCGCCTGCGTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTTCCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCATCATCATCATCATCATCATCACGTTCATGTTTGTTTCACGTGCGTTTGTGCGTGTGTGTGTGTGTGCGTTTACTTGTATTTGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCGCTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTT]

[+] EMBL BM631955             [CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAAAAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCCCGTCGGAACCGGTGCACTTTCGCCTGCGTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTTCCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCATCATCATCATCATCATCATCACGTTCATGTTTGTTTCACGTGCGTTTGTGCGTGTGTGTGTGTGTGCGTTTACTTGTATTTGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCGCTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCACTGTT]




>consensus_19#1
CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAAAAAACAA
TTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCCCGTCGGAACCGGTGCACTT
TCGCCTGCGTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTTCCGGCGGCACCCGA
CCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCATCATCATCATCATCA
TCATCACGTTCATGTTTGTTTCACGTGCGTTTGTGCGTGTGTGTGTGTGTGCGTTTACTT
GTATTTGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCGCTATTGTTGCTTGTTGCAGTCG
AAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGCTGCTGGCCAAACGGGCCCACGA
TGGTAGCGGCGTGGCTGTGGCCCCTTCCCAGGACCCGGGCAAGACGACGGTGGACGGCAC
TGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_19#0      CCGGACAGGGACAAGAAGAAGAGCGTCAAGATCGAGGCACCCCACAAGGCGGAGGAGGAT 60
consensus_19#1      ----CCGGCGATCATTCTGAATGTTCTAAAAACGAAACAATTCTAAAAACGAAACAA--- 53
                         * * **  *     *  *    ** * ***  **   *  **  ** *  *    

consensus_19#0      AAGGAGAATGCACGCGCCAGTGCTGGGCCAAGTCGAAGCAATAGCACCGCTTCATCGCAG 120
consensus_19#1      AAAACAATTGCTATTAATTATCGTGTATCGTCACCAATCGATGATGCC----CGTCGGAA 109
                    **    * ***         *  **   *    * ** * **    **    * *** * 

consensus_19#0      CCTCGCACACCGCTGCTGGCCAAACGGGCCCACGATGGTAGCGGCGTGGCTGTGGCCCCT 180
consensus_19#1      CCG-GTGCACTTTCGCCTGC--GTTTATCGTGCGTGTGTGTGTGTGTGCTTGTGTGTTTT 166
                    **  *  ***    **  **        *   **   **    * ***  ****     *

consensus_19#0      TCC-CAGGACCCGGGCAAGACGACGGTGGA--CGGCACTGTTAAAGCAACCGAACAACAG 237
consensus_19#1      CCGGCGGCACCCGACCACCACGTGTGTGACATCATCACCACCACCACGTACGATCATCAT 226
                     *  * * *****  **  ***   ***    *  ***    *   *   *** ** ** 

consensus_19#0      CAGGAAGGCGCGGCAGCAGAAGCTTCAACAACCATCGCAGCGAGCCTGGATGCGGACCAC 297
consensus_19#1      CATCATCAT-CATCATCATCACGTTCA-TGTTTGTTTCA-CGTGCGTTTGTGCGTGT-GT 282
                    **  *     *  ** **  *  ****       *  ** ** ** *   ****      

consensus_19#0      TCGCCCGGTGCTAGTACGACGGAATCGTCCAGCAGCGACACTACACCGGATGACTCGTCG 357
consensus_19#1      GTGT---GTGTGCGTTTACTTGTATT-TGTGTCTTCTATTGTGGTGCGTGTGTGTGGCCG 338
                      *    ***   **      * **  *    *  * *   *    **  **  * * **

consensus_19#0      TCCCCGG-ACTCGTCACCGGCGACCAAGCTGCGAGACGGCGACGGTGTCCGGAGCGTTG- 415
consensus_19#1      CTATTGTTGCTTGTTGCAGTCGAAGCAATAGCACCGCTTCATCGCAGCCTCGCACACCGC 398
                         *   ** **  * * ***   *   **    *  *  **  * *  *  *   * 

consensus_19#0      -GCAAGCAGAACCGCCCGAAAGCAAAAACCGATCACGCAAAAACATCCTCCTCGGAAGAC 474
consensus_19#1      TGCTGGCCAAACGGGCCCACGATGGTAGCGG----CGTGGCTGTGGCCCCTTCCCAGGAC 454
                     **  **  *** * ** *       * * *    **         ** * **  * ***

consensus_19#0      GAATCAAGCGAG-CAGCAGCAGATGGGCACCGACGGCAAGCTGGACGGCAAGTCACCGCA 533
consensus_19#1      ---CCGGGCAAGACGACGGTGGACGG-CACTGTT-------------------------- 484
                        *  ** ** *  * *  ** ** *** *                            

consensus_19#0      GCTAGCGTCCCGCATCCCCACCAAGGGACCGAACATGAAGCTGTTCAAGGGTCCGAACGA 593
consensus_19#1      ------------------------------------------------------------
                                                                                

consensus_19#0      TGATTTGCTGCTTACCGATTACGTCACCTGGA 625
consensus_19#1      --------------------------------