|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT]
[+] EMBL BM631604 [CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT]
consensusID : consensus_1913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence
[CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG]
[+] EMBL BM603634 [CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1913#0 CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCA 60
consensus_1913#1 ------------------------------------------------------------
consensus_1913#0 TGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGC 120
consensus_1913#1 ---------CCGTGC--CTCCTCACGCCGCCACC-CCGAACACACCGCCCGATCCGATCG 48
* *** * * **** * ** ** ** *** **** ** * * **
consensus_1913#0 CGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGC 180
consensus_1913#1 TCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATC 108
* *** * ** * * * *** **** ** * * **** *** *
consensus_1913#0 CGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTG 240
consensus_1913#1 AGC----TGCTGTGGATTC--------AGCAGCGTGAA--ATCAACAATCT-CAACAATG 153
** * * * **** * * ** * * * ** **
consensus_1913#0 CGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGT 300
consensus_1913#1 CGGTCTTGTTG--CTCCAG-GAGCGCATTCTCGGCACCAACA---GCAGCATGCTGCTGC 207
*** **** ****** * ** ** ** **** * ** ****
consensus_1913#0 ACGATGA--ACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCT 358
consensus_1913#1 ACGAAACCCACGGCCCACCGATGGCGGC---CACGTTGATTCGGGCCGAGTCGACG--CC 262
**** ** * ** ** *** ** ***** * * ** * * ** *
consensus_1913#0 GGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAG 418
consensus_1913#1 ACCGAAC---------AACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAG 313
***** **** * * * *** **** * ** * **
consensus_1913#0 CAGCA-GCTCGCAGCCGGCTACACCGACC--CCGGCCATGGGCCAGCAGCAGCAGCAGCA 475
consensus_1913#1 CAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCC 373
***** * * * * * * **** * *** *** *** ***** *
consensus_1913#0 GCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAA 535
consensus_1913#1 CTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGC-ATGC 432
* * ***** **** * *** * * * * * * *** * * *
consensus_1913#0 CAATCTCAACAACACCGTTAACA-ACAACCTGTCCAACGCAAACATGCAGAACAATCACA 594
consensus_1913#1 CACCCTTCACCCAGCAGCCGCCCTACAGTCCGC---ACGCTGCCATGCCGCCCAATCACG 489
** ** ** * * * *** * * **** ***** * *******
consensus_1913#0 -------ATCTGTACAGCCAGCAACAGC-AACAGCAGCCAGAGTCCTCCTCCCAGCAGCA 646
consensus_1913#1 CCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATA 549
** ****** * *** * ** * ** * * ** *
consensus_1913#0 AACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT 692
consensus_1913#1 CTAACCC-CCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG-- 592
* **** * **** * * *** *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||