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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT]
[+] EMBL BM650851 [CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT]
consensusID : consensus_1918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG]
[+] EMBL BX620496 [GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1918#0 CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGC 60
consensus_1918#1 ------------------------------------------------------------
consensus_1918#0 GTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCT 120
consensus_1918#1 ------------------------------------------------------------
consensus_1918#0 TTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACA 180
consensus_1918#1 ------------------------------------------------------------
consensus_1918#0 TGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACA 240
consensus_1918#1 --------------------------------------GTGGTGTAATCGCTTGGCGACA 22
* ** ****************
consensus_1918#0 GCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTG 300
consensus_1918#1 GCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGT---TTCTGTTTG 79
********** ************** ********* ************ ********
consensus_1918#0 CGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 360
consensus_1918#1 CGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 139
***** **************** *************************************
consensus_1918#0 TTGTGTTTGTGT-----------------------TTTTTTTTCCTCATGTTCATAGTAA 397
consensus_1918#1 TTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAA 199
*********** ********* ***************
consensus_1918#0 CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 457
consensus_1918#1 CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 259
************************************************************
consensus_1918#0 CGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATA 517
consensus_1918#1 CGGAAAANCGTA---TGTCGGGTGGATATA-----ACACAACTACCCAAAGCAAAACATA 311
******* **** * ********** * ********************* ***
consensus_1918#0 AGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGT 577
consensus_1918#1 AGAAATAAGTGATGGCAAAACA-TAGAAATGATTGATCATTGCTGCTGCTTCACGATGGT 370
************* ****** * *********** *************************
consensus_1918#0 TCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCAC 637
consensus_1918#1 TCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTG-TCGCGTACACGCAC 429
**************************** **** ********* * **************
consensus_1918#0 TACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT----- 692
consensus_1918#1 TACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTG-AATTTTGGCACATTCGACC 488
************** *********** ********* * * ********* ****
consensus_1918#0 ------------------------------------------------------------
consensus_1918#1 TGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTT 548
consensus_1918#0 -----------------------------------------------------------
consensus_1918#1 ACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG 607
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||