cluster # 1924

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Anopheles gambiae
cluster # 1924 cluster # 1924 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1924#0 length = 665 sequences # 1

consensus_1924#1 length = 527 sequences # 1

consensusID : consensus_1924#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGATAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACCGGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATCGGGCGTGCCAC]

[+] EMBL BM582581             [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGATAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACCGGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATCGGGCGTGCCAC]




>consensus_1924#0
CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTT
TTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAA
TTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTC
CGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTA
CGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGAT
AGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGA
AGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTC
GTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAA
AATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGATAAGGA
ATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACCGGAAAG
CTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATCGGGCGT
GCCAC

consensusID : consensus_1924#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG]

[+] EMBL BM630689             [CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAGAAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGGGGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTACTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGGAATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAATACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAATACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAAAACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACGGGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG]




>consensus_1924#1
CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAG
AAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGG
GGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTA
CTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGG
AATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAA
TACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAAT
ACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAA
AACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACG
GGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1924#0      ------CCGCCCACGCGTCCGCCCACGCGTCCGTCTGTTTTCTATTTTTGTGTACGCGAG 54
consensus_1924#1      CCGGATCGATTCAGCTGCATCGTCGTTGTTTGTTCTGTTTTCTATTTTTGTGTACGCGAG 60
                            *    **   *      *     *   ***************************

consensus_1924#0      AAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGG 114
consensus_1924#1      AAAGTTTTCCCTAACGAGCGACATACAACGAGTGCAACAAATTCTACACATGTCGATCGG 120
                      ************************************************************

consensus_1924#0      GGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTA 174
consensus_1924#1      GGTGAATTTACGTGTGACGGGCCACACGTCAATCGGTGGCCGCAAATACCAGGAAGACTA 180
                      ************************************************************

consensus_1924#0      CTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGG 234
consensus_1924#1      CTTTTCCGTCGCCTATCAGCAAACGGAAAATGACCAAAATCTGGAGTACGCGTACTTTGG 240
                      ************************************************************

consensus_1924#0      AATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAA 294
consensus_1924#1      AATTTACGACGGGCATGGTGGCGCGGAAGCGTCCCTTTACGCCAAGGAGCATCTGATGAA 300
                      ************************************************************

consensus_1924#0      TACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAAT 354
consensus_1924#1      TACGATAGTGAGCCAGAAGCTGTTCTGGTCGGAAAATGATGATGATGTGTTGAAATCAAT 360
                      ************************************************************

consensus_1924#0      ACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAA 414
consensus_1924#1      ACGCGAAGGCTACATCCAGACACACTATTCGATGTGGCGCGAGCAAGAGAAATGGCCAAA 420
                      ************************************************************

consensus_1924#0      AACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACG 474
consensus_1924#1      AACGTCGTCCGGATTGCCGAGCACAGCGGGAACGACGGCCAGCATTGCGTTTATAAGACG 480
                      ************************************************************

consensus_1924#0      GGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGGGTTACCAGAACGA 534
consensus_1924#1      GGGCAAAATTTACATCGGTCACGTAGGAGACTCTGGCATCGTGTTGG------------- 527
                      ***********************************************             

consensus_1924#0      TAAGGAATCGGCAAACGATGGGCGCTGGGTGGCAACACCGCTCACCGAAGACCACAAACC 594
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      GGAAAGCTACGCAGAAAAGATGCGTATTATGAGTTGTGGCGGTAAGGTAGTTACCAAATC 654
consensus_1924#1      ------------------------------------------------------------
                                                                                  

consensus_1924#0      GGGCGTGCCAC 665
consensus_1924#1      -----------