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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA]
[+] EMBL AL694777 [ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCGCTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCGCAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCACGTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAAAGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACACAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATAAACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAACAGTAAGTGTGCNATGTTTCAATCTTTAATCANAATGANNACACCNCACAATCACTNATAGTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAAAACAGTAGCCAACTGGCACCAGCTAATCGCGCACGATCGGATTGTTTGGTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGA]
consensusID : consensus_1930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT]
[+] EMBL BM628220 [CCGATATAAACAAACAAAACAGAAAAGGGAAGAAAGACGTAAGCAAACAAACAAACAAACAACAGTAAGTGTGCATGTTTAATCTTTAATAAATGAAAACAAAATACTATAGTAGTAGACAGCGAAGGGCGAAAGAGAAACTTGTTAAACGAAATGCAAAACAAAACAGTAGCCAACTGCACCAGCTAATCGCGCAGGATCGGATTGTTTGCTCCGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCTCATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGGGCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGCCCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTGCTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGACAATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1930#0 ATCCCCCGAGTTAGTTAGGAGTACGCATCAGGCCGCTACACTAGCAAGCAAGCAGCAGCG 60
consensus_1930#1 ------------------------------------------------------------
consensus_1930#0 CTTACTACTGCACACGCTTGCAAACAAAAAGAGAGCCAAAAAGCCGTACATAGACAGCCG 120
consensus_1930#1 --------------CCGATATAAACAAACAAAA---CAGAAAAGGGAAGAAAGACGTAAG 43
* * ******* * * ** *** * * * **** *
consensus_1930#0 CAAGCCGAAATCCAAGGGCGTATAGAGATTGTAGGTACGCCAGCCTGTCAGCAGTTTCAC 180
consensus_1930#1 CAAACAAACAAACAAACA---ACAGTAAGTGT--GCATGTTTAATCTTTAATAAATGAAA 98
*** * * * *** * ** * *** * * * * * * * *
consensus_1930#0 GTGTATGGTTATATTTTCTAGATTTTTAAACGAGTGAGACTAAACCAATGTAAAAGTAAA 240
consensus_1930#1 ACAAAATACTATAGTAG-TAGACAGCGAAGGGCGAAAGAG-AAACT--TGTTAAACGAAA 154
* **** * **** ** * * *** **** *** *** ***
consensus_1930#0 AGTAAACGAAACAAAACACACATTTGCACGCATCGCAAAGGAATGCTTGCAATTGCAACA 300
consensus_1930#1 TGCAAAACAAA-ACAGTAGCCAACTGCAC------CAGCTAATCGCGCAGGATCGGATTG 207
* *** *** * * * ** ***** ** * ** ** * *
consensus_1930#0 CAAACCAACACACAGGCNAGTGGCACAATATAGCAGAGAAAGAGAGAAACGAAACATATA 360
consensus_1930#1 TTTGCTC---------CGAATCGCATGCTGGAGCAGTGTATGAAACTAAATGTGCGATCT 258
* * * * *** * ***** * * ** * ** *
consensus_1930#0 AACAAACAAAACAGAAAAGGGCANNGAACAGCACGTAAGCAAACAAACAAACAAACCAAC 420
consensus_1930#1 CATCGTTAGAGCAGATCAGTTTGGTTTTCGACAGCTCATCCCACATTTTTCGGAGACAGG 318
* * * **** ** * ** * * * *** * **
consensus_1930#0 AGTAAGTGTGCNATGTTTCAATCTTTA-ATCANAATGANNACACCNCACAATCACTNATA 479
consensus_1930#1 GCGTTGTGAGTACTCTTCTCCTGCCCACATCGAAGCAATAATACCCCACCATTAGGCGGC 378
*** * * ** * * *** * * * *** *** ** *
consensus_1930#0 GTCAGTAGCACAGCGACAGCGGCGACANAGAGAAACTTGTTAACACGANATGCAAAACAA 539
consensus_1930#1 CCCACACAATTCCTTTCCTCTCCCACCCGTGCGCATTGTTATTCGTTAGTAGACCGGCTG 438
** * * * ** * * * * * * *
consensus_1930#0 AACAGTAGCCAACTGGCACCAGC-TAATCGCGCACGATCGGATTGTTTGGTCCGAATCGC 598
consensus_1930#1 CTTTGTTTTTGGGGGGAGACTGCGTAATTATCTATTGCCAGGTTATCCCAGTCTCCAGAC 498
** ** * ** **** * * * ** * * *
consensus_1930#0 ATGCTGGAGCAGTGTATGA----AACTAAATGTGCGATCTCATCGTTAGAGCAGA 649
consensus_1930#1 AATGGGAATCGATGCAAGAGTCGAACCAGTTTTGCTAGCCACTACTTAT------ 547
* * * * ** * ** *** * * *** * * * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||